Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g945.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000002:6597482...6601768
NR annotation: CAH3134080.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q03358	Homeobox protein MSX-2 OS=Mus musculus OX=10090 GN=Msx2 PE=1 SV=2
Q0P5C3	Homeobox protein MSX-2 OS=Bos taurus OX=9913 GN=MSX2 PE=2 SV=1
Q9GK08	Homeobox protein MSX-2 OS=Canis lupus familiaris OX=9615 GN=MSX2 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR050674	Family	Msh Homeobox Transcriptional Regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24338	HOMEOBOX PROTEIN MSX	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0048598	Biological Process	embryonic morphogenesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09341	MSX; homeobox protein MSX	-	Transcription factors	ko03000	deepkoala