Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g9812.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000047:271880...277460
NR annotation: XP_027053053.1, RNA-binding protein 41-like [Pocillopora damicornis]
Species abbreviation PACUT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96IZ5	RNA-binding protein 41 OS=Homo sapiens OX=9606 GN=RBM41 PE=1 SV=2
Q8JZV4	RNA-binding protein 41 OS=Mus musculus OX=10090 GN=Rbm41 PE=2 SV=1
Q8RWV8	U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP65 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005017 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR045164 all species →	Family	RNA-binding region-containing protein RBM41/RNPC3	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16105 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005689 all species →	Cellular Component	U12-type spliceosomal complex	Interproscan
GO:0030626 all species →	Molecular Function	U12 snRNA binding	Interproscan
GO:0097157 all species →	Molecular Function	pre-mRNA intronic binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Pocillopora_acuta_HIv2___RNAseq.g9812.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.