Gene detail

Detailed information of Pocillopora_acuta_HIv2___RNAseq.g9817.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000047:333974...343381
NR annotation: CAH3046400.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation PACUT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JI99	Sphingosine-1-phosphate phosphatase 1 OS=Mus musculus OX=10090 GN=Sgpp1 PE=1 SV=1
Q55A00	Probable sphingosine-1-phosphate phosphatase OS=Dictyostelium discoideum OX=44689 GN=sppA PE=3 SV=1
Q9BX95	Sphingosine-1-phosphate phosphatase 1 OS=Homo sapiens OX=9606 GN=SGPP1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005220 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01569 all species →	PAP2	PAP2 superfamily	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036938 all species →	Homologous_superfamily	Phosphatidic acid phosphatase type 2/haloperoxidase superfamily	Interproscan
IPR003902 all species →	Domain	Transcription regulator GCM domain	Interproscan
IPR000326 all species →	Domain	Phosphatidic acid phosphatase type 2/haloperoxidase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14969 all species →	SPHINGOSINE-1-PHOSPHATE PHOSPHOHYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0006670 all species →	Biological Process	sphingosine metabolic process	Interproscan
GO:0042392 all species →	Molecular Function	sphingosine-1-phosphate phosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04716	SGPP1; sphingosine-1-phosphate phosphatase 1	EC:3.1.3.-	Sphingolipid signaling pathway	ko04071	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.