Gene detail

Detailed information of Pocillopora_acuta_HIv2___TS.g13131.t2 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xpSc0000388:397701...411521
NR annotation: RMX40102.1, hypothetical protein pdam_00002256 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Pocillopora_acuta_HIv2___TS.g13131.t2

ATGGAAGACGAACGAATTGCTGCTCTTATGAAATATGTACGTGGAGAAATAAGCTTTGAGCAGTGGATTGAAATAGGAGGAGGTGGATCGGGCGAGGCAGAGACAGAGGACATCGGCCTGCAAGATGTCGAGGAGGTCGGACGAGAGGAAGAAAGCCAAGGACGAGCAGTGGAGAATATGATCACTGTTCTTGTATCAGAGCCAATGTTTGCAAAATTGGCAGAAATTGGATCCACAGAAGCACCAAGCACAGATCTCCCAGGTGAACCACATCATGTTCCTGATAGTGATCCAAATGAATGCAATATGGAGTCACAGACAGCATCCCAGCCATCAGTTCGAATGACAGATCTTTTGCTCCAAGGAGCTGCAGCAAAAAGTGCCAAGAAACATGGTGGTACTGGTGTTGATGAATTCATGGAGGAGATTCCTGTCCAAAAATGGCGAAGAGCTGGACGTCGTAAATTGTATGAGTTACCTCCAAAATTAAAGAAAACCATGGGTCAAGCTAATATTCTGTGGGCTAGAGGAGAAATTGAGAAAGCTAAAGGAATCTGTATGGAGCTTATTCGACAAGGGTGTAAAGGGCTAAGTACAGTTCCAAAGTGTTCAGAACCTTTCCAGACCTTAGGAATGATGTATGAAGAACAGGGAGACCAAGAGAAAGCACTGCAGTTTTTTCTGATTGCTGCATATCTCAGCAAATCGGGAGATTTGGAGGAATGGGTTAAACTAGCAATGATGTCCCTTGAACAGAATAATTTGGATCAGGCATTAACCTGCTATAATCAAGCTCTGAAGCTGGAGCCGACAAATTTAAATGTTCTTTGGGACAGAGCAGCTTTGTGCTATCAGATGGGAGATCATAAGAAAGCTCTGGAGTTTTACGAATCTGCCCTAAAGAATGTTCCTTCAGATGATGGGGCAAAGTTTGTTGAGCTGTCTTGTGAAATGGCTAAGTTATATCATGAAAACAAGTCCCTGGATGAGGCAATAAAAGTATTGCAAACTGCTCTTTCTAAACATCCTGATCATGCAAATAACCAAGCAATTAACATGTTGGCCGACCTTCACATGACGTCAAAAGATTATAAGCTTGCTTTTGAGATGATTTCAAAGTATTGTGATGTCAAACAAGAAGTCATGTCACTTGACACAGGAGAGTCACCTCTGACGACATTTTCACAACTTATGAATGATGAAGCTCAGGAGGGAGACATTTCAAGATCTCCTGAGAAAGACAGTGGTCACAAAAAAATCAACTATATTATACCTGAAGACCTTCCCATTGATCTTTGTGTCAAGTTCGCCATATGTCTTATTCACTTGAGGCAGTTACATGCAATTAAGGAGATTCTTGTACCACTATTCATGGAGACAGTTGAGTCAGCAGGTGACCTTTACGTTGATGTTGCTGAGGCTTACGCGGAAAATGGTGACTGTGAAGAAGCGTTACCCATCCTGGATATGCTGGTAGCGTCAAAAAACTTTTCACTGGCTGCAGTGTGGCTGAAAAAGGGAGAATGTCTGACGTCACTGGGCAGAATAGAGGAAGCCGCTTCAGCTTATTCAAGAGTTGTTAATTTAGCTCCAAATCATCTGGATGCTCGTCTTGTCTTGGCCTCTCTTCATCAACAGCTGGGAAGACCCAACCAGGCTCTGGATGTGCTATCAGCTGATCCAAGAGGAGAGGGGATTGGAGATTCTGTTGAGGACGAGGTTGCCATGGATACGAGTTCTGTGAACTCCGAAGGGACTGAAACGGAACCTGCAGTACAACCTCAGGATTTTCGTTTGCTCTTCCACAAGTGTGCGCTGTTACACTCACAGAGTCGCATGAATGAGTTTTTGGACGCAGGAATAAAGATGTTTCGTTTGTTTTTCATCGATGTGTATTACATTAAAGATCTAACAGACATGGCCTTGAAGTCAAGTAGATTCAGAAGGGAACTGATGCAAAAGGAAGCATTGGAACAGGAAGAGTCACGGTCCCGCGCAAGTGTCGTGGCCTGTAGTCGAGGAGAGACTGGGCTGAGAATTGAGGAGTGGTGGGAGATGTTTAAAAAGGTCGTCTCAAGTCTAAGTGGCTTGAAGCGGCACTCTGAGGCACAACATATGGTATTATGTGCGCTGGCCTCTGATCGCTTCTCCGACTCTTATCAGACAGAACTGGTCTTCATGAGTATTGTAGCGTTGTACCTCAACAGAGAGTACAAAGTAGCGTTTGACGCAACAAAAATACTCATTGCGAGGGACAAAAAGAATCCAGTCTTATGGAACATACTTTCTCGAATTACCGCCAGGTCTGGGGACTGCAGACATCAGCGCTATGTGTTGAGGCTCTTGATTAAAAGTCCTGATGAGTTTCCGTTAGTGATGTTCAGCGGTCACAATGCTCTGGTCAGCGGAAGTTACCGATTCGCAGTAGGCGAATACGTTCGAGCTTTCCGCCAAGCCCCAGAGGATCCTTTGATCTCGCTATGCTTAGGCCTGCAGTACATTCACTTAGCTTGCCAGCGGTTTCCAAGGAACCGACACTTTTGTGTTGTGCAGGGTATTATCTTTCTTTTTCAATATCTCGGTCTTCGCGGCGAATGTCAAGAGGCGTTTTACAACATTGCTCGTGCTTTTCATCAGCTAGGTCTTCTTCAGTTCGCTGTCCACTACTACAACAAAGCTTTGGAATTCCCTTTGCACGAGGCCTCCAAAAGTGACGGAAGTAACGGTGGGAAGTTTTCAGAAAAGCACGATCTCCACAGAGAAACAGCATTTAATTTGTCTCTGATTTATCGAGCAAGTGGAAACGAGATTATGGCCAGAGAATTGTTGATGACTCATTGTTGGGTGTGA

Transcript

Pocillopora_acuta_HIv2___TS.g13131.t2

Protein

Uniprot

Uniprot term	Description
Q9Y5Q9	General transcription factor 3C polypeptide 3 OS=Homo sapiens OX=9606 GN=GTF3C3 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12895	ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	Repeat	Interproscan
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13414	TPR_11	TPR repeat	Repeat	Interproscan
PF13432	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039340	Family	Transcription factor Tfc4/TFIIIC-102/Sfc4	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23082	TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000127	Cellular Component	transcription factor TFIIIC complex	Interproscan
GO:0006383	Biological Process	transcription by RNA polymerase III	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15201	GTP3C3, TFC4; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)	-	Transcription machinery	ko03021	deepkoala