Gene detail

Detailed information of Pocillopora_acuta_HIv2___TS.g1340.t1b in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xpSc0000390:975047...983827
NR annotation: XP_027059098.1, collagen alpha-1(I) chain-like [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
P08121	Collagen alpha-1(III) chain OS=Mus musculus OX=10090 GN=Col3a1 PE=1 SV=4
P13941	Collagen alpha-1(III) chain OS=Rattus norvegicus OX=10116 GN=Col3a1 PE=2 SV=3
P02461	Collagen alpha-1(III) chain OS=Homo sapiens OX=9606 GN=COL3A1 PE=1 SV=4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01410	COLFI	Fibrillar collagen C-terminal domain	Family	Interproscan
PF01391	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000885	Domain	Fibrillar collagen, C-terminal	Interproscan
IPR036056	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR050149	Family	Collagen superfamily	Interproscan
IPR008160	Repeat	Collagen triple helix repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24023	COLLAGEN ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005201	Molecular Function	extracellular matrix structural constituent	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan