Gene detail

Detailed information of Pocillopora_acuta_HIv2___TS.g13970.t2 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000038:13633...20291
NR annotation: ,

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
Q90416	Retinoic acid receptor RXR-gamma-A OS=Danio rerio OX=7955 GN=rxrga PE=2 SV=2
Q5BJR8	Retinoic acid receptor RXR-gamma OS=Rattus norvegicus OX=10116 GN=Rxrg PE=1 SV=1
Q0GFF6	Retinoic acid receptor RXR-gamma OS=Sus scrofa OX=9823 GN=RXRG PE=2 SV=2

Gene family	Subfamily
Transcription Factors Family	ESR-like
Transcription Factors Family	Miscellaneous
Transcription Factors Family	NGFIB-like
Transcription Factors Family	THR-like
Transcription Factors Family	GCNF-like

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00105	zf-C4	Zinc finger, C4 type (two domains)	Domain	Interproscan
PF00104	Hormone_recep	Ligand-binding domain of nuclear hormone receptor	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001628	Domain	Zinc finger, nuclear hormone receptor-type	Interproscan
IPR000536	Domain	Nuclear hormone receptor, ligand-binding domain	Interproscan
IPR001723	Family	Nuclear hormone receptor	Interproscan
IPR050200	Family	Nuclear hormone receptor family NR3 subfamily	Interproscan
IPR013088	Homologous_superfamily	Zinc finger, NHR/GATA-type	Interproscan
IPR035500	Homologous_superfamily	Nuclear hormone receptor-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48092	KNIRPS-RELATED PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0000790	Cellular Component	chromatin	Interproscan
GO:0004879	Molecular Function	nuclear receptor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08524	RXRA, NR2B1; retinoid X receptor alpha	-	Nuclear receptors	ko03310	deepkoala