Gene detail

Detailed information of Pocillopora_acuta_HIv2___TS.g19454.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000023:2212897...2234606
NR annotation: RMX43113.1, hypothetical protein pdam_00006900 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Pocillopora_acuta_HIv2___TS.g19454.t1

ATGGACACACACATGAACCCTGGAGTACTGATCATGCCTGGAGAACTTAATGTTGCACAATCCGTCTCCATCGGGATAGGAAAGGCAATCATGACTGACTCCAAATACTTTACAACAACCAAGAAAGGGGAGATCTTTGAGCTCAAGGCAGAGCTGAACAGTGATAAGAAAGATCGCAAGAAAGAAGCAGTAAAAAAAGTTATTGCTAGCATGACTGTTGGGAAGGATGTCAGCTCCTTGTTCCCAGATGTGGTGAACTGTATGCAAACTGACAACTTGGAGTTAAAAAAGCTGGTGTACCTTTACCTTATGAACTATGCTAAGTCTCAGCCCGATATGGCAATCATGGCTGTCAATACTTTTGTTAAGGACTGTGAAGACCCAAACCCACTTATTCGGGCTTTAGCTGTTCGCACTATGGGCTGTATCCGCGTTGACAAGATCACAGAATACTTGTGTGAACCCCTGCGCAAGTGCTTGAAGGATGAAGATCCCTATGTTCGCAAGACTGCTGCAGTTTGTGTAGCCAAGCTTCATGACATCAACTCTCAACTAGTGGAAGATCAAGGCTTTCTTGATTCCTTGAAGGATCTTCTGTCAGATTCTAATCCCATGGTTGTGGCTAATGCTGTGGCTGCCTTATCTGAGATTGGGGATGTTTCACCAACTGCTGCTGCCATGATGGAAATTAATTCTCAAACCATCAACAAACTGCTCACAGCACTCAATGAATGCACAGAGTGGGGACAGATATTTATCCTTGACTCTTTGGCACAGTACACTCCTAAAGATGACAGGGAGGCTCAGAGCATTTGTGAGCGAGTCACCCCCAGGTTGTCTCATGCCAATGCTGCTGTGGTTCTGTCTGCTGTCAAGGTTCTTATGAAATACATGGAAATTATGACTCCCTCATCATCATATGTGCAGAATCTTGTTAAAAAACTGTCTCCACCCCTGGTGACATTGTTGTCCAGTGAACCTGAAGTCCAGTACGTTGCTCTTAGGAATATCAATTTGATTGTGCAAAAGAGGGCAGATATCTTGAAGAATGAGATGAAAGTCTTCTTTGTCAAGTACAATGACCCAATTTATGTAAAACTTGAAAAACTGGATATTATGATTCGGCTGTCAAATCAACAGAACATCGCCCAAGTCTTGGCAGAGTTGAAAGAGTATGCCACAGAAGTTGATGTTGATTTTGTGAGGAAATCAGTACGTGCAATTGGACGCTGCGCCATCAAAGTTGAGCAATCTGCAGAACGCTGTGTGAGCACTCTTCTGGACTTGATTCAAACCAAGGTTAACTATGTGGTACAAGAAGCGATTGTGGTTATCAAGGACATATTCAGGAGATACCCAAACAAGTATGAAAGTATAATCTCCACCTTGTGTGAAAATCTGGATTCATTAGATGAGCCTGAGGCGAGGGCATCGATGATTTGGATCATTGGTGAATATGCTGAGCGAATTGACAATGCTGCAGAGCTATTGGAGTCCTTCCTGGAAGGTTTCCAAGATGAAAATTCTCAGGTTCAACTGCAGCTGCTGACATCCATTGTGAAGCTGTTCTTGAAGCGTCCAACTGACACTCAGGAGCTAGTGCAACAGGTCTTGAGTCTGGCAACACAGGATAGTGATAACCCAGATCTCAGGGACAGGGGCTACATCTACTGGCGGCTTCTTTCAACTGACCCTGTGGCAGCAAAGGAAGTTGTGCTGGCCGAGAAGCCCCTGATATCTGAAGAAACTGACCTCCTAGAACCCACTCTCCTTGATGAACTGATCTGCAACATTTCCACATTGGCATCTGTGTATCACAAGCCACCCAGCTCATTTGTTGAAGGGCGCACTGCTGCAAGGAGATTCACCTTGCCACCGAGGGCTGAGCCATCTCCAGGGGCTGAGACTGAGGAAGCTACCCCTGCTCCATCCCAACCAGTTGCAGCTCCAGTAACTGCTTCAGTGGCAGCCCATGCACCGCCATCTCAACCAGCAGCTGACTCCTTACTTGGTGACCTGTTGATGGACATGGGACCCACTCAACCTGCTGCCCCACCTGTGCAGCCAGCAGCAGCGGCAGGGGGAGGAGGAGTTATGGATCTTCTGGGAGAAGACCTAAGTGGTTTACAGCTTGGTGGAGCTCCAAGTCCTGCTCAGCCAATGGGAGGGCCGATGGGGGGCTTGGGCGATCTTTTCAGTCTGTCTGGGGGACCTGGTATCTCAGGAGGAATGTACTCTGCGCCTAAACAGATGTGGCTCACTGCTGCCAAAGGGAAAGGAGTTGAGGTTTTAGGAACATTTTCTCGACGTCAAGGACAGATTTACATGGATATGACATTCCACAACAAAGCCATGCAAGCCATGGGAGACTTTGCCATCCAGTTCAATAAGAACAGTTTTGGTTTGGCACCCGGTTGTCCGCTAAACATTCCATCGCCGTTGCTCGCCAACTCCTCCGCGGAAACTTCGCTTCCTGTAAACACAAATGGCGCTGTGCTGAGAATGGACCCACTTACAAACCTCCAGGTGGCCGTTAAAAATAATGTGGATGTGTTCTACTTCAGTTGCACTGTTCCTTACAACGTGCTGTTTTCAGAAGATGGCCAGATGGATCGCAAGGTGTTTTTAGCCACGTGGAAGGACATACCTGCAGGGAATGAAGTTCAGAATCAAATCACCAATGTAAATTTTTCTTCAGAAGTTGCTCAACAGAAACTTTCTGCCAACAACATATTTACTATCGCAAAACGTACAGTGGAAGGCCAGGACATGCTTTACCAGTCACTGAAATTCACCAATAATATCTGGGTTTTGGCCGAACTCAAGATGCAACCTGGTAACACTGTGGTGCAGTTGTCGCTGAAGACGCGAGCCATGGATGTTGTTATGGGCGTACAAGCTATGTACGAGACCGTCCTACACAACTGA

Transcript

Pocillopora_acuta_HIv2___TS.g19454.t1

Protein

Uniprot

Uniprot term	Description
O35643	AP-1 complex subunit beta-1 OS=Mus musculus OX=10090 GN=Ap1b1 PE=1 SV=2
Q10567	AP-1 complex subunit beta-1 OS=Homo sapiens OX=9606 GN=AP1B1 PE=1 SV=3
P52303	AP-1 complex subunit beta-1 OS=Rattus norvegicus OX=10116 GN=Ap1b1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09066	B2-adapt-app_C	Beta2-adaptin appendage, C-terminal sub-domain	Domain	Interproscan
PF01602	Adaptin_N	Adaptin N terminal region	Repeat	Interproscan
PF02883	Alpha_adaptinC2	Adaptin C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015151	Domain	Beta-adaptin appendage, C-terminal subdomain	Interproscan
IPR008152	Domain	Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain	Interproscan
IPR009028	Homologous_superfamily	Coatomer/calthrin adaptor appendage, C-terminal subdomain	Interproscan
IPR000225	Repeat	Armadillo	Interproscan
IPR002553	Domain	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Interproscan
IPR012295	Homologous_superfamily	TBP domain superfamily	Interproscan
IPR013037	Homologous_superfamily	Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomain	Interproscan
IPR013041	Homologous_superfamily	Clathrin adaptor, appendage, Ig-like subdomain superfamily	Interproscan
IPR026739	Family	AP complex subunit beta	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11134	ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0030131	Cellular Component	clathrin adaptor complex	Interproscan
GO:0030117	Cellular Component	membrane coat	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12392	AP1B1; AP-1 complex subunit beta-1	-	Membrane trafficking	ko04131	deepkoala