Gene detail

Detailed information of Pocillopora_acuta_HIv2___TS.g21961.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000002:10753666...10765579
NR annotation: RMX57345.1, hypothetical protein pdam_00022089 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Pocillopora_acuta_HIv2___TS.g21961.t1

ATGGGGAAAACGAAGGAAGCTAATGATTCGAAACGAAAAAGAAAACGTGTTGCAGTGGAATCAAGCAGCGACGATGATGAGAGTGAACAAGACTTAGAGGAGGAATTGAAGTCACTCGCTAAACGTTCGAGACCAGCGAACGATAGTAACGCCAAGCCACAGCGATCAGGAGATTCAGACAGTGACTTGGACTCATCGGAGGGAAGTGATGATGAGTGGACAATGGATTCTGAGAATAGTAAAGGAAAGGCTGCAAAAGCTAAGGACAAGAAAAAAGCCAAAAAAGCTTCATCATCGGGTTCTTCATCAGAAGAAAGTGGTGAAACATCCTCTGGTGAGTCATCATCATCATCATCATCCTCAGAGGATGAAGAGGAAGAGCAGTATCATGATGATTGGGATGACAACCTAATGGGAGATGAAGCAGATAGGGCAAGACTTGAAAAGATGACAGAGAAAGAGCGAGAGCAGGAGATTTTCAACCGTGTTGAGAAAAGAGAAGCTCTTAAGACTCGATTTGAAATTGAAAGAAAACTCCGTCTTGCAAAAAGAAAGGAGAAGAAGAAGAAACGAGAGAAGGAAAAAGCAAATCTTGAGAAGGAAGGAATAGCTTTGCGGAAAAAAGAGCGAAAGAGACACATTGAAGAGAAGAAAGCAAAAGCTTTGGATGATCTAAAGGCAAAGAGATCTGAGAAGAAAGAGAAGAAAGTTGCAGAATCTCTAGCAGACCAAAAAGCACCACAGTTTAAGACTAGTGATGTGTTTACTGACGATGAAGATGACGATGAGCAGGAGGAAAGCAAGTCAAGTTCGGGGGAAGGATCATACCAAGAATCTGATGAAGAGCAAGGCGAGGCACAACCTCAAAGGGTGTCAGCTTTGGGAGATCTGGAGAGGATAAGAATATCACGGCACAAGCTTGAAAGATGGGTACACATGCCCTTCTTTGGCAAGATAGTGATTGGCTGTTATGTCCGCGTTGGTATCGGAAATCATGATGCAAGACCTGTTTATAGGGTAGCAGAGATAAGAGATGTGGTGGAAACAGCCAAGATATACTCTTTGGGAAGTACAAAAACAAATAAAGGATTGAAGTTGAAACATGGCAACCAGGAAAGGGTGTTTAGATTAGAGTTTGTGTCAAATCAGAGATTCACAGAGACGGAATTTGCCAGGTGGAAAGAAGAGTGTGAATCTCATGACATTCCTTTACCAACACTTGAGGAAGTGGACACCAAAGCTAAACAATTCAATGAAGCACAGCATTACATGTATAATGAAGAGGATATTGACAAGATTGTTGCAGAGAAACAGAAATTCAGGAAAACACCCTTTAATTATGCTCAGAAGAAGAATCATTTAATGCGATCAAAGGAAATAGCAGAACAGAAGGGGAACTTGGAAGAAGCAGAAAAATTGCGTGGTGAATTGGATGACTTGGAAGAGAAAGCACAACAACTTGACAAAGTGCGGTCTAAAAACCTTAGTGCTATCAGTTATATCAATGAAAGAAACAGAAAGAGGAATATTGTGGAGGCTGAAAAAGCTGCAGCTGAAGAAATGAATGTGGAACAAAAAGCTGATCCATTCACAAGACGGAAAACCCTTCCTCAACTTGTGTCTATGTCTAATAGAACCATTCCAAGTTCTGTTACACAAGCACAAAATGGAGCGAATACTGAAGGGGCAGCTTCTTCTTCGATGCCCCAATCCACCAGCACTGATGGAGCTTCATCATCAAGCCAACCAACTGAAACAGCTGATGTGTCAGATATAGAAAGACTTGCACAAATGCCATTGGCTGGAGCAGCACCTCATCCTCCTGAGGGGAAACCTTCTCAGTCAGAGGATCTGTTTTCAGCACACAACTTCGACATCACAATAAATCTCGACATTCCTGCCCCTGGAACAGTTGGATTTGTAGTACAGAAGGAAGTGTTTGGACAGTGCATGTTTCATTGCAGGAAAGATAATGGTGCTTCAGGGCCTGTTTTTGTTGAAGAAAAGGAAAGGAGGAATTTTGGTTTGACTTTTCATTTTCCTCCATTTGAGCCAAGGAGTTAA

Transcript

Pocillopora_acuta_HIv2___TS.g21961.t1

Protein

Uniprot

Uniprot term	Description
A2AQ19	RNA polymerase-associated protein RTF1 homolog OS=Mus musculus OX=10090 GN=Rtf1 PE=1 SV=1
Q92541	RNA polymerase-associated protein RTF1 homolog OS=Homo sapiens OX=9606 GN=RTF1 PE=1 SV=4
Q5RAD5	RNA polymerase-associated protein RTF1 homolog (Fragment) OS=Pongo abelii OX=9601 GN=RTF1 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03126	Plus-3	Plus-3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004343	Domain	Plus-3 domain	Interproscan
IPR036128	Homologous_superfamily	Plus3-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13115	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0016593	Cellular Component	Cdc73/Paf1 complex	Interproscan
GO:1990269	Molecular Function	RNA polymerase II C-terminal domain phosphoserine binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15178	RTF1; RNA polymerase-associated protein RTF1	-	Transcription machinery	ko03021	deepkoala