Gene detail

Detailed information of Pocillopora_acuta_HIv2___TS.g22237.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000025:429047...431092
NR annotation: XP_020607913.1, TNF receptor-associated factor 6-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR018957	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005164	Molecular Function	tumor necrosis factor receptor binding	Interproscan
GO:0009898	Cellular Component	cytoplasmic side of plasma membrane	Interproscan
GO:0033209	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0070534	Biological Process	protein K63-linked ubiquitination	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04506	SIAH1; E3 ubiquitin-protein ligase SIAH1	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala