Gene detail

Detailed information of Pocillopora_acuta_HIv2___TS.g26828.t2 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xpSc0000387:4286252...4291150
NR annotation: RMX57575.1, hypothetical protein pdam_00023195 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Pocillopora_acuta_HIv2___TS.g26828.t2

ATGGATGTTCAACAACTGTTTAAAAGCCTCAGGAAAGAAGCTGAATGTCCTCTGTGCTTAGAGACAGTCAAAGATCCCAAGACTCTGCCATGTTTACACTCATTCTGTTTGGTATGCCTCGACAAACACGCTAACTACGCAAGAAGACAGCTTCAGACAGCAATCAAATGTCCAGTTTGTCAGGCTAGCTTTCAAATCCCTCAAGAAGACACATTTGGCGGCCTACCCGCGTCTTTTCATCTCAACCGATTGGTGGATCTCCTCGCTCTAACGGATGGTGGTACAGAGTCCCAACAATGTGGCAGTTGCGAAGAAAACAACATTGCGACTCACTATTGTTTTGAGTGCCAGAGCTTTCTCTGTACAACTTGTTTTAAAGCTCATCAACGCTTCAAGGCCACAAGAGGTCACAAAAATATCTCTGTCGACAATTTGCAAGCAGACGATGTCGAAAAGTTGATTCGTAGACCAGTCATGTGTTCAGAGCAATATCATCAAGATCAACCACTGGAGTATTATTGCAAAGATTGTAACGTTTGCACCTGCATAAAGTGCAGTGTTGTAAGTCATAATCACCACACTATGGTTGATATGCAGAAAGCTGCAGATGAACAAAAGATGCAAATAGACGAGGCTTTGAAGAAAGTGAGAGCAGAAGTTGTTATTTTTGAAAATGAAATGAAGAACCAAACTGAATTCATGAACAAAAACAAAACACAAATATCGGCTGCCAGAGAGAAGATGAACGAGACTGTGGACGATTGTATTCGCTTATTAACGGAGCATAAGGCGTCAATGAATGCCAAATTCGATGAAATTAATCAAGCCCATCGAAAAGTTCACGCAACACATCTGGAAAACTTCCAGCTCGCTGTCGCGCAGTTGAAAAGTTCTTTGGAACAAGGGGAGAATATCTTGGAGAGGAATATCAATGCTGAAATTCTGCAAACGAAGCCAGTGATTATTGGACGCTGCGAGGACCTTTTGAATGCGAAAAAACCCGAGATATACAAACCACCCCGTGTTCATTACGCAGTAGAGCAGAAATTGGATATTTCAGATCGAGTTGTTGTGAGCCATACGGATCCCTCATCGATACTTGTGAAAGATCTTTGTGAGAAGGTAGAAGAACAGAATGAGACATATTTTACTATTATCACAAGGGATTCAGAGGAAAGACCGTGCTATAATGAGGATGATTACATAAAATGTGACATTCGCACTTTAACAGGGGATAGCTTCGAAACCGTACATCTAAAGATTGAGGACAACGAAGATGGTAGTTACATAGTAGAATACACACCACCTCATACCGGATTGTATGAAGTGAAAGTTGAACTTAATGGACAGCCGCTGGATGGTAACCCATGGAGTGTGCAAGTCATACCTCATCAGTATCAGTTGAAGTTCAGTTTTGGTTCAAATGGCAGTGGACCAGGACAGTTTAATGGACCTTATGATATTGCTGTTGATAAGAAAACAGGAATTGTTGCCGTATCTGACTATGGAAATAAAATAATTCAGCTGTTTGGCACTAATGGCAAATACCTGAGAGAGATAGGACTGAGGGCTAGCTGTTGCTCATTAGACTTTACCAAGTCCGGTCAAATAATTGCCGTTACTCCTGGTGATGTTCACAAAATTTCTTTGTTTTCTAAGGAGGGTCAGTTTGTCAAGCACATCGACAATGAGCACTTGAAGTTTCCTTTTCATATATCGACTGATGATGAAGAGTTTCAAACGATTTGTGATCAAGGGAATAATGAAGTCATAGTCATCGCTCCTGACAGTACAGAGCCATTGACACGTATCACTGCTTCAGGACATGATCGATCAGTAATGTGCGCCATTTGGCACGAAGAAACACACCGTTACTTTGTCTCTGATTCCAAAGCTGACCTTGTCAAGGTTTTTAATGAGGAAGGAAATTTTATGTATGAAATTGGGCGTGGAAGGTTACTGAATCCTTTTGGACTTGCTATTGACAAATTTAACAATTTGATCGTCTGTGATGCTGGGAACAAGAGACTCAAAGTATTTACTACAGAAGGAGACTTTCTCTCAGAGACTGTACAATGTTTCCACACACCGCGGTTTATTGCCGTGTCTGAAAAAGGGGAAGTTCTGGTCACTGATTATGAGAAAGACTTAGGGCAGAAATTGGATATTTCGGATCGAGTTGTTGTGAGTCATACGGATCCCTCATCGACACTTGTCAAAGGTCTTTGTGAGAAGGTAGAAGAACAGAATGAGACATATTTTACTATTATCACGAGGGATTCAGAGAAAAGACAGAGTTATAATGATGATGACATAAACTGTGAAATTCGCACTTCAACAGGGGATAGCTTGGGGACGGATCTTAAGATTGAAGACGCGGAAGATGGCAGTTATACAATTAAATACACACCAGATCAGATTGGATTATATGACCTAAAAATTGAAGTAAATGGACAGCCGCTGGATGGAAGTCCGTGGACTGTTCAGGTCATCCCTCATCAGTATCAGTTGAAGTTCAGCTTTGGTTCATGTGGCAACAGACCAGGGAATTTTAATTATCCTTGCGGTGTTGCTGTAAGTGAGAAAACAGGAACTATAGCCATTTCTGATTATTCGAATAATAGAATTCAGCTGTCTAGCTTCAACTGGAACTACCTTAATGAAATACGACTGGGGTCTTCATGCTCGTCTGTAAGCTTTACTGAGTCCGATGAAATTATTTCCGCTACCCCTCATGATGTTAATAAGATTTGTCTCTTTGCTAAAGACGGCAAGTTTGTCCAGCACATCAACAGTAAGCACTTGCAGTGTCCTTCTCACATTATCAGTAGTGATCCGATAAACCATGTCTTTGAGGTCATCTCCCCCGACGGGACAAAATTACTAAAACGCTTCCGTGCCTCAGAACATCATGATTCAATAAAGTGCGCAATCTACCACGAGCAGAAATTCTTTGTCTCTGATTGTAAGGCTCACCGTGTTGGTGTTTATGACGAGGACGGAATATTGTTGTATGATATTGGCAGCAAGGGGTCTGGCGACGGACATCTTGCTCACCCCAGTGGACTAGCAATTGACACATTCAACAATTTGCTCGTCTGTGATGTTGGGAAAAGTTCAGTTCAGGTATTCACACGAGACGGAAAGTTTGTGTCGATGTTTGGAATGTCTTCATTTGCACCGAATTATGTTGCCGTGTCTAAAAATGGAGATGTTTTTGTAACTGACCATGTGAACCATTGTGTTCATGTCTTTCACTAA

Transcript

Pocillopora_acuta_HIv2___TS.g26828.t2

Protein

Uniprot

Gene family

Uniprot term	Description
E1BD59	E3 ubiquitin-protein ligase TRIM56 OS=Bos taurus OX=9913 GN=TRIM56 PE=2 SV=1
F7H9X2	Tripartite motif-containing protein 2 OS=Callithrix jacchus OX=9483 GN=TRIM2 PE=3 SV=1
Q9C040	Tripartite motif-containing protein 2 OS=Homo sapiens OX=9606 GN=TRIM2 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR050952	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR018957	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11997	TRIM2_3; tripartite motif-containing protein 2/3	-	Ubiquitin system	ko04121	deepkoala