Genomic Location: Pocillopora_acuta_HIv2___xpSc0000393:1210635...1231946
NR annotation: RMX54024.1, hypothetical protein pdam_00013677 [Pocillopora damicornis]
| CDS | ||||
| Pocillopora_acuta_HIv2___TS.g27624.t4b | ||||
| Transcript |
| Pocillopora_acuta_HIv2___TS.g27624.t4b |
| Protein |
| Pocillopora_acuta_HIv2___TS.g27624.t4b |
| Uniprot term | Description |
|---|---|
| P39060 | Collagen alpha-1(XVIII) chain OS=Homo sapiens OX=9606 GN=COL18A1 PE=1 SV=5 |
| P39061 | Collagen alpha-1(XVIII) chain OS=Mus musculus OX=10090 GN=Col18a1 PE=1 SV=4 |
| P39059 | Collagen alpha-1(XV) chain OS=Homo sapiens OX=9606 GN=COL15A1 PE=1 SV=2 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13385 | Laminin_G_3 | Concanavalin A-like lectin/glucanases superfamily | Domain | Interproscan |
| PF06482 | Endostatin | Collagenase NC10 and Endostatin | Domain | Interproscan |
| PF20010 | Collagen_trimer | Collagen trimerization domain | Domain | Interproscan |
| PF01391 | Collagen | Collagen triple helix repeat (20 copies) | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR016186 | Homologous_superfamily | C-type lectin-like/link domain superfamily | Interproscan |
| IPR013320 | Homologous_superfamily | Concanavalin A-like lectin/glucanase domain superfamily | Interproscan |
| IPR048287 | Domain | Thrombospondin-like, N-terminal domain | Interproscan |
| IPR050149 | Family | Collagen superfamily | Interproscan |
| IPR010515 | Domain | Collagenase NC10/endostatin | Interproscan |
| IPR045463 | Domain | Collagen type XV/XVIII, trimerization domain | Interproscan |
| IPR008160 | Repeat | Collagen triple helix repeat | Interproscan |
| IPR016187 | Homologous_superfamily | C-type lectin fold | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24023 | COLLAGEN ALPHA | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005615 | Cellular Component | extracellular space | Interproscan |
| GO:0030020 | Molecular Function | extracellular matrix structural constituent conferring tensile strength | Interproscan |
| GO:0030198 | Biological Process | extracellular matrix organization | Interproscan |
| GO:0031012 | Cellular Component | extracellular matrix | Interproscan |
| GO:0062023 | Cellular Component | collagen-containing extracellular matrix | Interproscan |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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