Gene detail

Detailed information of Pocillopora_acuta_HIv2___TS.g28083.t2 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000006:5466210...5480432
NR annotation: CAH3152985.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

Pocillopora_acuta_HIv2___TS.g28083.t2

ATGGCAGAGGTTGAAAGGTCAAGAATACGCAGCGTAGTTCAGACTGTAAAGCATTCCAATTCTCCAAGCACGAGGATAACGAGATCGCGGTCTCGATCGAGATCACCGGTTGAAGGAAGAAGGAAAGCTAATGAGGATAAAGAGAACATACGCAGGAGTGATGATGATGATGAGGATGAAAAGGAATACCACGGAAGACTGCAACAAAGTGATAGTGACAATGACACAAGATCTCAGCGGAGGAAAGAAAGAAAGAAATATGACTCAGAACGATATAAGGAGCGAGAAAGACATGACAGTCGAAGACGTCGCAGTGATGATGATGATGGTGATAATGGTGGCTGGCGTGCAGATCGGCGAAAAAGGCAAGAATGTAGATCTGACAGAAGAAGGCAAGATACACCTTCAGATGATGAGAGGTATGACAATCGCAATCCAGTCGAGAAAAAAGGTAAATATGATGAGAGAAGAGAACAGCCAGAACAAGAAGGATCAACAGAGAAGACTGAAGAGCCAGAAAAGGTTGTACGAAAGAAGGCAAATACAGATAATCCACTCCTGACGAGAACAGGGGGAGCTTACATTCCACCAGCAAGACTCAAAATGATGCAGGAAGGCATTGAAGATAAGAGCAGGTTTTCCTTTTATGAAGCCTATCAGCGTATCAGCTGGGAAGCTCTGAAGAAAAGTATCAATGGTCTCGTTAACAAGGTTAACACATCAAACATTGGCAACATTGTACGAGAGCTTTTTCAAGAAAACATTGTGAGAGGAAGGGGTGTTCTTTGTCAATCAATTATCAGAGCACAGGCAGCGTCGCCCACATTCACCCATGTTTATGCTGCTCTTGTAGCCATTTTGAACACAAAGTTTCCCAAAAATGGTGAACTTCTTTTGCGTCGGTTGGTGCTGCAGTTTAGGAGAGCTTACAGAAGAAATGACAAGGCTGTGTGCTTATCATCCACAAGGTTCATAGCTCATTTGGTCAACCAACAAGTGGCCCATGAGATTTTAGCTTTGGAGATCCTGACATTATTGTTACACAAACCCACAGATGATAGTGTTGAAGTTGCAATTGGGTTCCTAAAAGAAGTTGGAATGAAATTAACTGAAGTATCTTCCAGGGGTGTTCATGCTGTGTTTGAGAGGCTGCGGAACATTCTTCACAATGCAGAGATTGACAAGCGAGTTCAGTACATGATTGAAGTGATGTTTGCTGTAAGAAAGGATGGATTTAAGGATCATGTTGCAGTACCTGATGAACTTGACCTTGTTGAAGAGGAAGATCAAATCACTCATTTATTGCGGCTGGAGGAAGCATCAAATCCAGAAGACATTTTAAATGTCTTCAAGCTTGATCCAAATTTCTTGGAAAATGAAGAGAAATACAAAGAAATCAGAAGAGATATTCTTGGAGAAGGAGACTCGGGTGATTCTTCTGATGGAGATGATGATGATGATGACGACGACGACGATGATGATGAAGGCGAGGGCCAAGATGACAAAAAAATGGAGATTATTGATCACACTGAAACAAATCTTGTAGCTTTGAGAAGAACAATATACCTCACCATTCAGTCCAGTTTGGATTATGAGGAATGTGCCCACAAACTGCTGAAGATGCAAATTAAACCAGAACAAATGTCTGAGTTCTGTACAATTGTCATCGATTGCTGTTCTCAACAAAGATCTTATGAGAAGTTCTTTGGTCTCCTGGCCCAGCGGTTCTGCCAGCTTAATAAAGAGTACATGGAGGAGTATCTCAAGGCTTTTCAGGAACAATACGAAACAATCCATCGCCTTGAGACGAACAAACTCAGGAACGTGGCCAAGTTCTTCGCTCATCTTCTTTTCACTGATGCCATCCCTTGGACGGTGCTAGACTGTATAAAACTGAATGAAGACGAAACCACCTCCTCAAGCCGTGTTTTTATCAAGATTCTGTTCCAAGAGTTAGCCGAATACTTGGGCCTTCCAAAACTCAACGAGCGCCTGAAAGATCCGTTTCTGGCACAATATTTTGAAGGAATCTTTCCCCGCGACAATCCACGCAACACTCGGTTTTCAATCAATTTCTTCACCTCAATTGGTCTTGGTGGTATCACAGACGAACTGAGAGAGCATTTGAAAAACGCTCCTAAAATGATCATGTCCCAGCAGAGGCCTGGTGAGAGCGATAGCGATTCGGATTCTTCTGACGACAGCGACAGTGAAGATAGTTCAAGTTCGGAAGATTCTTCCGAAGAATCTCCGGAGTCTTCTGAAGACTCCTCGGACGATGATCGTAAGAAGAAAAGGCACAAGAAGAAGCATTCGTCTCGGAAGAAGAAGAAAGAATCGAATTCCAAGAAGAAAGAATCAGATTCCAAGAGACACAAGAAAAGGCGATGA

Transcript

Pocillopora_acuta_HIv2___TS.g28083.t2

Protein

Uniprot

Uniprot term	Description
Q52KN9	Pre-mRNA-splicing factor CWC22 homolog OS=Xenopus laevis OX=8355 GN=cwc22 PE=2 SV=1
Q08C72	Pre-mRNA-splicing factor CWC22 homolog OS=Danio rerio OX=7955 GN=cwc22 PE=2 SV=1
Q8C5N3	Pre-mRNA-splicing factor CWC22 homolog OS=Mus musculus OX=10090 GN=Cwc22 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02847	MA3	MA3 domain	Repeat	Interproscan
PF02854	MIF4G	MIF4G domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR003890	Domain	MIF4G-like, type 3	Interproscan
IPR050781	Family	Pre-mRNA-splicing factor CWC22	Interproscan
IPR003891	Domain	Initiation factor eIF-4 gamma, MA3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18034	CELL CYCLE CONTROL PROTEIN CWF22-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13100	CWC22; pre-mRNA-splicing factor CWC22	-	Spliceosome	ko03041	deepkoala