Gene detail

Detailed information of Pocillopora_acuta_HIv2___TS.g28412.t2 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000001:1087450...1099246
NR annotation: CAH3142117.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

Pocillopora_acuta_HIv2___TS.g28412.t2

ATGGAAAAAGGAAGAAAGAGGTCTCGTGATTATTATGAAAGAGAAAAGTCACCCACCGGGAAAAGGAAAAGCTGCACTGTTTGGGAAGATCTACGTTCCACTTTAGACGAACTCTTCTTCCGCGACTGTGATTTGATTAAACGTGGAACTCAAGATTATAAGGACTTCTGGTTATTTCTGGAACGGTATGAAGCCTTTCACAGTAAGAGACAAAAAGAAAAGCAAACAAAAGCAAAGGACACTAAAGATTGGAGGTCCCCTAAACTAGGACTCCCTTTATCATATGACAGAAGGTATAAGATAAATGTTGCTCTGTTGTCAAAAGATATTTCTGATGTAACTGGATACAGCACCACTGGAATTAAGAAAGTTTACTCCTCTTTGGACAAGAAAAGCAAGCCATTGGGTAATGAGCTATCAAGAGAAGAGTTTTTGGAATTTAAATCCATCATGTTGTTTTATATTGATTTTTGTCAGAAGCAAAAGTTTTCCAAATTAGTGAAGTTGAAGAAGGACCAGGCAAACCTTCCCATAAGCAATTTTAAAGAGCAGATTATTGATGCATTGGGAAGCAACCAGGTGGTTATTATTGCTGGTGATACAGGGTGTGGAAAGTCAACACAGGTTCCTCAGTATCTTTTGTATGCTGGCTACACACAAATTGCATGCACTCAACCTCGACGGATTGCTTGCATTTCATTGGCCAAAAGAGTAGGGTATGAAACTCTGAATGAATATGGATCCCAAGTGGCTTATCAGATTCGTTTTGAAAGCAGCAAGACCCTGGGCACCAGAATTTTGTTCCTGACTGAAGGCTTGTTGTTGCGTCAATTATCTACCGACCCCACCCTCAGTCAGTACAATGTTATCGTGGTGGATGAGGTACATGAGAGACATATTCACGGAGACTTTTTACTTGGTGTTTTACGTGGTTTGCTGCAGGCCCGTGCTGATCTTAAGCTGGTTCTAATGTCTGCCACTATAAATATCAGCCTGTTTGCCGGCTATTTTACAGGAGCGCCAGTTATTCAGATTCCAGGTCGTTTGTATCCCATTGAAGTTCGGTACCAGCCTCCAAAAGTCGAGTTTTCAAGCAGCTCAAAACGATGGGAGAGACTGGACCCCGCTCCTTACGTCAGAATCATGCAGCTTATTGATCATAAGTACCCGTCAACAGAGCGAGGAGATGTTCTGATGTTTCTCAGTGGCATGGCCGAAATTACAACGGTTGTTGCTGCTGCTAAGGAGTATGCGCAACAGTCTCGCCGGTGGATAATACTCCCGCTTCACAGCTCACTGTCTGTAGAGGAGCAAGATAAGGTTTTTGATGTGCCTCCTGAAGGTGTTCGCAAATGTGTTGTGTCCACAAACATCGCTGAGACTTCCATCACAATCGATGGCATCAGGTTCATTGTGGACTCTGGAAAGGTAAAGGAGATGAGCTATGATACTGAAGCTAAAATGCAGCGACTGCGTGAGTTCTGGATAAGTCAAGCGAGTGCAGAGCAGCGCAAAGGAAGGGCTGGAAAGTTTGAACGTCGTACGGGTCCCGGTGTGTGTTTTCGTTTATATTCTGAGAGTGATTATCAAGCCTTTTCGCAATACACCACTCCTGAGATTCAGTTGGTACCTTTAGACTCCATCATTCTGCAGATGGTCTCTCTTGGTATTAATCGCATCCGCGAGTTCCCCTTCATAGAACCACCACCAGCATCCAACGTTGAAAACTCAATTTACACTCTTAAGCAACAAGGTGCTCTGACAGATGATGAAGCCTTGACACCTATTGGACAAATGTTGGCTCAGTTGCCTGTTGATGTCGTCATTGGAAAGATGCTTCTAATTGGCTCAGTGTTCCACGTGATTGAACCCGTTATGATCATAGCTGCAGCTCTCAGTGTTCAATCTCCTTTCACACAAAAGATGGGTTATGACTCTGTAGTGGCGTCACTAAGGCAGCCTCTAGAGTCTGACCATGGCGACCTGTTTACGCTGCTGAATGCCTACGATGAGTGGCTACAGGTGAAGAGTCATGGAAGCTCTTCTCGGAAGTGGTGCAAGCGCAGAGGTCTGGAAGAACAGCGTTTTTATGAAATGTCCAAACTAAAACGTCAATTCGAATCGCTCCTGCGGGATCATCACTTGATGGATCTCGAGGAACGTGATGAGGATGCGGAAGACCGGGATCGGGAGGAAGATAAAAGGCGGGAATTGAAGAAACTGAAACGAAAACATCGCAAAGAAACACGGAAAACAAAAATGCTAAAACTGGACGAGGACCAGGAAAGCGGAGACGAAAGAGATGAGGAGACTGGAACTGACATCCGCGATCTAGAATTTAAGCTTACACACGACCTGGACAAGCTTGAGGCAGGAAGTACAACGAGGCGCAGCTTCACATTGCGAGACATAAATTTGCTGAAGATTATTCTCTGCAGTGGACTGTACCCTAACCTGGCTTTGCCAGATGAGAACAACACGAACAAAAGGGACTCGGAGCAGTTGTTTCATAGCAAGGCAAAGCAATTCCTTCAGGTTCTTCCTACCAGTGTGTTTGCCAGTCGACCTCAACTACTACAACTCACTGAGTCCCCAGTTAATTATCAGTTGCTCACGTATGTCTCTCTTTTGGAGACCAGCAAACCGTATTTGGTACAAGCCATGCGAGTCCCAGCGTTACAAACTCTTATGTTGTTTGCACAAAGCTTGGACACTAACGCAGATTTGACACGCTTTGTTGTAGACGGTTGGCTTGAAATCTCCTTTCCAGATAACAACACCGGGCAGGAGGTGATGTTCTCTGTCCAACGGCTACGCTCCACTTGGGTTCGCCTGTTGAAGCTAAGATTTGATGAGATTAAAGACAAGCAGGATCGTAGTGCTACACGACGAAACAGAGACCTGGACTTGGAAAGTCATCTGGCCAAAAAGTTGTCTGAATTCTTGGACAGTAATGTCACTTACTCACTCCGACGACTTCTACCGTCTGAAAGCCGATACTTGTATCTTGGTCCTCTCGGTCAAAGTCAGAATGATGACAGGTTGGAGGATACCTCTGGTTTGCCTTTCACGGGAAGCCTGGAACCGCACCCAACCAAGGGGGGCTTCCGTGTGAGTGATTATCTGACCTACAGCTGCCTACAAGACACTGTCATGGCCGAGGCTGCCTCTGCCGCCGCTCAATACATTGCTAAGCATTGGCGGTGCGAGAAATGCGGCCAGAAAATGTTGGTGACTGTTTTGGAAAGGTTGAGACATGAAGAAGAATGCCAGAATGAACAGGCCCATGACTCAAACGACCCAGTGGTTGAGTCTCATAAAGACAAAGTAGCCGTTAACCCATCAATCGAGAGGTTAAGAAAGTCATATTATTGCAACACATGTCAATCACAATTCTCATTTACAAGTACTGAAATTTTAAAGCATAAGAAGTCCCATTTGTCTTCTACATAG

Transcript

Pocillopora_acuta_HIv2___TS.g28412.t2

Protein

Uniprot

Uniprot term	Description
Q14147	Probable ATP-dependent RNA helicase DHX34 OS=Homo sapiens OX=9606 GN=DHX34 PE=1 SV=2
Q9DBV3	Probable ATP-dependent RNA helicase DHX34 OS=Mus musculus OX=10090 GN=Dhx34 PE=1 SV=2
F4HYJ7	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana OX=3702 GN=At1g48650 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF04408	HA2_N	Helicase associated domain (HA2), winged-helix	Domain	Interproscan
PF07717	OB_NTP_bind	Oligonucleotide/oligosaccharide-binding (OB)-fold	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF21010	HA2_C	Helicase associated domain (HA2), ratchet-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR048333	Domain	Helicase associated domain (HA2), winged-helix domain	Interproscan
IPR011709	Domain	DEAD-box helicase, OB fold	Interproscan
IPR007502	Domain	Helicase-associated domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0000184	Biological Process	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005622	Cellular Component	intracellular anatomical structure	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20101	DHX34; ATP-dependent RNA helicase DHX34	EC:5.6.2.6	Messenger RNA biogenesis	ko03019	deepkoala