Gene detail

Detailed information of Pocillopora_acuta_HIv2___TS.g28534.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000001:2414478...2438483
NR annotation: CAH3141919.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q9WV82	Toll-like receptor 4 OS=Cricetulus griseus OX=10029 GN=TLR4 PE=2 SV=1
Q68Y56	Toll-like receptor 4 OS=Sus scrofa OX=9823 GN=TLR4 PE=2 SV=1
Q9QX05	Toll-like receptor 4 OS=Rattus norvegicus OX=10116 GN=Tlr4 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13676	TIR_2	TIR domain	Domain	Interproscan
PF00057	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF00047	ig	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023415	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR002172	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR000157	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR036055	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013151	Domain	Immunoglobulin	Interproscan
IPR035897	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR051221	Family	Low-density lipoprotein receptor-related	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22722	LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006898	Biological Process	receptor-mediated endocytosis	Interproscan
GO:0016324	Cellular Component	apical plasma membrane	Interproscan
GO:0042562	Molecular Function	hormone binding	Interproscan
GO:0043235	Cellular Component	receptor complex	Interproscan