Gene detail

Detailed information of Pocillopora_acuta_HIv2___TS.g31608.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000039:58057...66961
NR annotation: RMX42106.1, hypothetical protein pdam_00001272 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Pocillopora_acuta_HIv2___TS.g31608.t1

ATGCTTGATAGGGATGGTCAAGATTTTGTAAAGGAAATGTGTGCAGAAATGATGGATGTTAGTCGAGATGAAGCCAAGCGGATTCTCAGGAGGCTTGAGCTAGAGGCATATTCATCCATTATCAGTGCTTTCAGGGCCCAGGGAGAGTTAAGCCGGGCTAAAAAGAAGATCTTGCAAGATCTTGGAACTCAGCTGAGTATTTCAACTGAGCGTCACAGGGCTGAAGTCCGAAGAGCCTACAGTGATGATAGACTTGGCATTGTGGCTGAGAGTATTTATGGTGCAGGCAGCTGTGCAGAATGGGCAGCAGAGGGGAGAAGGCTTGTACCACTCATGCCACGCCTTGTTCCACAAACAGTGTTCAGCTCCTCAGCAACTGCTGCTGCAAATTCTGCAGCTGCAGCAAATGCTAAACTTCCTGTTTCTTCAGCTAATAAAGCTGGTAGTAGTTCAAGTGCATCTGTTAACACATCATCTTCACTGACAAGCCAGCAAAATAGTAAGACCACGGCGGCCGTAAAACAACCTCAGACAGGTGGAACTCCATCAAATGATGCTGATACTTATGATGATGATGATGGAAAGCCAAAGAGAAAAAGACGTTTAAGTGTGACGAGCCTCAACAAGCCAGTTACAAAAGTGACCATCCCCACCCCCTCCCTGGTGTCAAAAGCTTTCACCAAACAGACCACATCAGTGAGCACTATGACTAAGTCTGGTAAATCTCTTGGTCCAGCAGGGACAATCAAAGCTGTCCCACGTACCACAAATCTTCCTGCATCAGCAGCACAAGTAAAACTACTCACCAAGACAGTGGCAGTATCCCAAACCAAGACAATCCTGAGCTATAAGGCAATGACATCGACAACATCATCACCTGCAAAAGTCCAAACAGCTGTGACACAGTCATCACCAAAGACTCAAACAAAAACTGCATCTGGAGTGCCTCCCAAGACAGTGCTTACTTCAAAAGCTCCATTGTCCACTGCAGTGAAGAATGTCTCAACAGGAGCTTCAAGTCCAGTAGCCACTGCGAGTCCTGCCGGACTGACACTCAAAACTGGTTTGACAGCAGCTCAGTTAGCAGCAAGACACAAAGTGAAACCTGCAGCTGCCAGATTCAAACCTCTTCCAGGAACTGTGAAATTCAAGTCAGTCACACCAGCTACTATGGGAACCTGTTCCACAGTTACTATGGTAACACCCAGTCCTAGTTCTCAAGCCTCCTCTACCTTACCTGTGTCAAACACACAGCCAGTTGTCCGTGTCATTCATGTTCCAGGAACTGGAGGTGTTGGTGGGAGTAAACCTGTTGTTGTCATGACAACAGGTCTCAGTAAAACAACTGTCGCTGGTGTGGTTCCTGGAAGCAGTAGTCCTTCTAGTCTTACAAAGGCAACTTCTCAGGTGGTAACTCAAAGCACCTCAGTGAACAAAGCAGTAGTCACAACTGCTGGCACAGTCACATCCCAAGCTCCATCAAAAACTCAAGTGTCTAGTGCTGTTACTCAGTCAGTTTCGTCAGCATCCAAAACAGTTGTTATGACAACCTTAGTAGGTGGTGCAAAGAGAGTGGTTCTGTCTGTGCCAGCCCCTTTACAACCTGGTTCCAATATCGTTCCATCCACATCCTCTCAGGGGCTAGTGATAACCAAGACACAAGGGATCCCTCTGACTTCCTCATCAGCCTCTCACTCACAACCTGTTTCCAAGAGAGATGCCAAAACATCACCAGCATTAGCCACTGTCTGTCCTAAATCATCTCCAACACAGATCGCACCCAGTCTGACAACTGCAACTGTCACTACACAGGTGAGATCAAGACCCCTCCCTACTATTCTTCCTGCTCCTCCAAAACCATCAACTGTGGCTCCAACTGCTGTTTCCAATTCGGGCAACATAAGGAAGCTTCCAACTATCTTACCAGCACCAGTTAAGAATGTTCCAGCTGTTATTCCAACTGTTCTGGTTCCTGTGGCTACTGGAGTAACTGCTCACACTGCATCGCAGCTGCAGTCTTCAGTGCCAATAGCTGTAAATACAGCTGTCTCTCAGGGTGTAGCAGCTTCAGTTTTGCCTCCTGACAAAGAAGGGGAGCAGCCCTCCCCTGGAGTACCAGAAAGACAAGATTGTGGTCTTGATTCTACAGATCAGAGTAATGCAACCATTGAATCGCAATGTTCAGACATAATGGAAAACTCTAAGACACATGTTGCAGTGAGCTCCAAATTGGCAGTGACAAATGAAAAAAACTTTGTGACTGAATGTGATAACAATACGTCATCAGAGGATGATTCTCTTCTAATCTGTTCTGAAACAATTGACAATGCAGGCTGCAACATACCTGAGGTACCATCAGCTGCGGAGTTTTTCAAAAATGTTGCTGAAAGCACACCTGTTAAAAATCCAGCAGATAATGGTGCTGAGGAAATGCCACAAACTGTGGAAGACTGCCAAGAAGCAGCTGTAGATCCAGTATCTTTACAAGATGGTGGAGTCTCTCTCCTGGATATAGATGGATCAAATGTGCAGAAAGTACCAACTAAAGACATAGAGACAGCAGGAAATTACGCTAAGAAATCCATGGGAAATGTTACTGTTCAAAGATTGGATGATTCTAGTGGAATATCTGATTTAGTAAAAGATTGTTTACCTGGAAATATATATTCAGAGTCTTCACAAGTGAAAAATGAGGATGAGAATTCTTTTAAATTTGACTTGGAGTCCGACGTTCAGTCATCACTTCAAGGTGTTCAGGAAGATGATCAGAATGTGACTGGGACATCTGCAGAGGATGGGCCTCCTGTGGAAAATGCCCTTCAAATAATTGCAAGCTTTGTGGAAAGCATGGAAGGAAGTTCATATGAAAAACATGAAGAAGTAAAACATACAACAACAAATGATCATCAGCTTGATGATTCATCAGGATTTTTAAGTGAATTACCATCCTCTAGTCAGGAAACCCCCATTCTTGTTCCCAGTGCATTTACATCGGAGGAAACAACAAAAGACGCAACTGAACCATCACCTACTGTGTCACACTCTGGAAAGGTCATTGATGAAGGACAAAGCCTGAGTGTTTTGTCACAATCTGAAGATGATAGTTGGGATGTTTCTGACGCACCCATTGATGTTTTGTCAACATCCACAAGTAGTTCTAACAGTATCCCTGAAAGCACATTGGAGCTTACAGAGAAGGAAATGAAAGCTCTTGAGGCTTTTGGTAGTGTTAGAACCAGTGGAAGGAAGAGAAAACCTCCATCATCCCTTGATGTGTCACCACCAAGACAAATTAGTGGCTGGGTGCGTGGTGCTCTCAGCGTCCTGCAGAAAGTTGCCAGCTATCGTGGCCAAGGAAGACGGAAAGGTGATTTCAGTGCTGCCACTTGGTTCCTCAAACCAGTGGACCCAGTTGATGCACCTGGCTACTACAAAGTAATAAAAACTCCCATGGATTTTGGAACGGTTAGAGTGAAACTAGAGTCTGGGAAATACCAGGAGTACAGTGAATTTCATTCTGATATGCTGCTGGTGAAGTCAAACTGTTTAAAATACAACCCTCCTGGCCATCATGTCCGACAGGACTGTGAGGAAGTGTTCAGGTTTTATGAAGCAGAGTATGCAAAAACGTTAGAGAGATGGGAAAAGTGTCATGTATCTCCTGCTAAAAAACCAAGACAAGCATCAAAGACAGAATTACCTGGCAGCATGTAA

Transcript

Pocillopora_acuta_HIv2___TS.g31608.t1

Protein

Uniprot

Uniprot term	Description
Q7Z589	BRCA2-interacting transcriptional repressor EMSY OS=Homo sapiens OX=9606 GN=EMSY PE=1 SV=2
Q7ZUV7	BRCA2-interacting transcriptional repressor EMSY OS=Danio rerio OX=7955 GN=emsy PE=2 SV=1
Q8BMB0	BRCA2-interacting transcriptional repressor EMSY OS=Mus musculus OX=10090 GN=Emsy PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00439	Bromodomain	Bromodomain	Domain	Interproscan
PF03735	ENT	ENT domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001487	Domain	Bromodomain	Interproscan
IPR005491	Domain	ENT domain	Interproscan
IPR036427	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR036142	Homologous_superfamily	ENT domain-like superfamily	Interproscan
IPR033482	Family	BRCA2-interacting transcriptional repressor EMSY	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16500	BRCA2-INTERACTING TRANSCRIPTIONAL REPRESSOR EMSY	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K25790	EMSY; BRCA2-interacting transcriptional repressor EMSY	-	DNA repair and recombination proteins	ko03400	deepkoala