Gene detail

Detailed information of Pocillopora_acuta_HIv2___TS.g31663.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000039:536305...538570
NR annotation: XP_027048775.1, U6 snRNA-associated Sm-like protein LSm1 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q8VC85	U6 snRNA-associated Sm-like protein LSm1 OS=Mus musculus OX=10090 GN=Lsm1 PE=1 SV=1
Q5E9Z8	U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus OX=9913 GN=LSM1 PE=2 SV=1
O15116	U6 snRNA-associated Sm-like protein LSm1 OS=Homo sapiens OX=9606 GN=LSM1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01423	LSM	LSM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001163	Domain	Sm domain, eukaryotic/archaea-type	Interproscan
IPR010920	Homologous_superfamily	LSM domain superfamily	Interproscan
IPR044642	Family	U6 snRNA-associated Sm-like protein Lsm1/8	Interproscan
IPR034104	Domain	Sm-like protein Lsm1	Interproscan
IPR047575	Domain	Sm domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15588	LSM1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000290	Biological Process	deadenylation-dependent decapping of nuclear-transcribed mRNA	Interproscan
GO:0000339	Molecular Function	RNA cap binding	Interproscan
GO:0000932	Cellular Component	P-body	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0016070	Biological Process	RNA metabolic process	Interproscan
GO:1990726	Cellular Component	Lsm1-7-Pat1 complex	Interproscan
GO:0000956	Biological Process	nuclear-transcribed mRNA catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12620	LSM1; U6 snRNA-associated Sm-like protein LSm1	-	Messenger RNA biogenesis	ko03019	deepkoala