Gene detail

Detailed information of Pocillopora_acuta_HIv2___TS.g3284.t2 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000009:3550393...3561247
NR annotation: CAH3116062.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q6IQU6	Ribosome production factor 1 OS=Danio rerio OX=7955 GN=rpf1 PE=2 SV=1
Q8AVP1	Ribosome production factor 1 OS=Xenopus laevis OX=8355 GN=rpf1 PE=2 SV=1
Q9H9Y2	Ribosome production factor 1 OS=Homo sapiens OX=9606 GN=RPF1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04427	Brix	Brix domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007109	Domain	Brix domain	Interproscan
IPR044281	Family	U3 snoRNP protein/Ribosome production factor 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22734	U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006364	Biological Process	rRNA processing	Interproscan
GO:0019843	Molecular Function	rRNA binding	Interproscan
GO:0000460	Biological Process	maturation of 5.8S rRNA	Interproscan
GO:0000470	Biological Process	maturation of LSU-rRNA	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0030687	Cellular Component	preribosome, large subunit precursor	Interproscan
GO:0042134	Molecular Function	rRNA primary transcript binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14846	RPF1; ribosome production factor 1	-	Ribosome biogenesis	ko03009	deepkoala