Detailed information of Pocillopora_acuta_HIv2___TS.g3761.t1b in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000019:159998...169460
NR annotation: CAH3158459.1, unnamed protein product [Pocillopora meandrina]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q7Z407CUB and sushi domain-containing protein 3 OS=Homo sapiens OX=9606 GN=CSMD3 PE=1 SV=3
Q9Y6N7Roundabout homolog 1 OS=Homo sapiens OX=9606 GN=ROBO1 PE=1 SV=1
O55005Roundabout homolog 1 OS=Rattus norvegicus OX=10116 GN=Robo1 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13927Ig_3Immunoglobulin domainDomainInterproscan
PF07534TLDTLDDomainInterproscan
PF00084SushiSushi repeat (SCR repeat)DomainInterproscan
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006571DomainTLDc domainInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR000436DomainSushi/SCR/CCP domainInterproscan
IPR050958FamilyCell Adhesion and Cytoskeletal OrganizationInterproscan
IPR035976Homologous_superfamilySushi/SCR/CCP superfamilyInterproscan
IPR003598DomainImmunoglobulin subtype 2Interproscan
IPR036179Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR007110DomainImmunoglobulin-like domainInterproscan
IPR003599DomainImmunoglobulin subtypeInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45080CONTACTIN 5Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0007156Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan

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