Gene detail

Detailed information of Pocillopora_acuta_HIv2___TS.g3875.t2 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000019:2892483...2898509
NR annotation: CAH3141499.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

Pocillopora_acuta_HIv2___TS.g3875.t2

ATGCAGCATGAAACCGAGAAAATGTGTGAGTTCGAAGGCGACAAAGTCTCAAACGAGGAAGAAACGAGAACAGTCAGCATTGATGGAAAGAACTGTCTCGCAGTAATTGCAGAAGCGTATTCCAGCTCAGAGGACGAGACTTCTGCAGACACTCGCCTCATTGCAGAAAGCAGTATGGTTGAAGATAGCATTGGCAACAAAATGGACACGAATGACTTCGTGAATGTTGGTGTTAATCTAGGTTCTGTTAGAGAGAAGAGTACAGCTTTGGAAGAACAAAACAACAGCTTAAATAGGGTTGGCTCGCATGGGACTGCGCCTCAAAGTAAACTTACCGTAGGGCCTAAAAGTGATGCTTTTATGCTCTCAGAACCTGGGAGTGATGGATGCGCTCTTGGTTTAAAGGAAAGTGATAGTCAGTTAGTTTTGAAGGTTCTGTCTAACAAGGACTATGTCATTGCACCAAGTGGTGATGATGATATTCCCTTATATCCTAAAAAAGACGACCATGCATTACCACAACCTAAAAGGTGTGAACACGTCCTTAAAATAAAACCTAAGGATAATGAATGCACAGTAGATGAGTCTATTGACAGGAGACACACATCTGTTGAGGAACAGGATGGTGGACAGAGCTTTTTAATGAGTAATGATGTTCCATCTGTAGCAACAGAGAGTGGTGAGCAAACAGTTGCAGAGCCAGATGACATAAGAGATGTAGATACTCCTGAAGAGTCCCAAAGAGATCAATGCAGAATTGTAGAGTTAGAGCAACATGGTCACTTTGCAACAAACCATGATGGAAATACTTGTCATCAGGTTTACACTATGAGTAGTATTGACAAAGAACTTGAGATTATCTGTGAGGGTGGGAGTACTGTGCAGACAAAAGAACATGCACAGGATCCAACTGCAGTTCACTCTTCGTCTAGCGATAGTTCCTCAGATGAAGAAAGCTCATCAAGTGAAAGCTCTGAATCCAGCTCTGATGATGATCTAGAAGACATCAGAAAAGAGATTGAAAAAGAGGAGGATCGTACCTATGTAGGGCCACAGAAAACAAGAAGTGAACTGTCAGTGAAGGACCTTCCTGAAGTTCCAGATGTGGATATTACTGTTGGTGAAAATGTTCAGCTTGTAGAACTTGGAGTGGTGTTCAGTGTGGTTGAGTCGTTAGTGGTAGTAAAAGCCTTACCACAAACTCCAGCTTTGGATTCAGACAGTGCTCTTTTCTTGGAGAACAGATCCTGTCTTGGTGTGGTTTTTGAGACCTTTGGACCAGTGCAGACTCCATTTTATTCAGTCAGATTTAACAATGAGGCAGACATTGACAAAAGAAATATTCATGTAGGGGACAAAGTGTTCTATGCTCCTGACATGATGGAGTATTCCAACTTTGTCTTTGTGGCACAGCTTAAAAAGCTGAAGGGATCTGATGCCTCATGGGAACATGATGAAGAACCCCCAGTAGAGAGTCTCTGTGATTCAGAGGCTGTGGAATTTTCTGATGACGAGGAAGAAGCTAAAGCTAAGACCAGCAAAAAGAAAGAAAGAATGGCTAAGAAAGGTCCAGCTGCAGATGTTGATAAGGCAAGTAACACAGAGAGTGAAAGAAATACTCACCAGGGATCCAATCGAGGTGGCAGGAAAAGAACTTGGCAGAACCGTGGAAGAGGAAAACCTGCCAACCAGAGCCAAGATGGAGGGAATTTTGCTACTAGCCCAAGGAGACCCTTTCCCCCTGCAAGAGGCACATTACCACTCAAGGCACCTCCTCATGTGGGGCTAAGACCTTCCCTTTTCGCAGGGAATCCCTACATGCACCACCCACCTCAAGGTCCTCAACAATTGATAATGGGACATACAGGACTCTATACAGGGCTACCTCCAAGAGGTCCATCTCAAAGAGGCCCATTTATGCCACAGCCCATGGGACCTTCTCCCGATACATATCCTGGCCTTATGGGAAATGTGCCCCTTCCTCAATTTGGTACACCAAGGCCATCTATTTCTCAACTTATCCCTACAGGGTTACCACCAGGATTTGCACCCAGACATGTTATTCCTGGACCTGCAGACCCTTATGACTATAGAGCAAATGTTGGACTTCAAGCAAGAAATGCAGGATTTCCTATCTCCTCACCCTCTCCTCCCACACTTCCACCGAACCTTTAA

Transcript

Pocillopora_acuta_HIv2___TS.g3875.t2

Protein

Uniprot

Uniprot term	Description
Q9VJ62	H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Drosophila melanogaster OX=7227 GN=CG10341 PE=1 SV=2
O14360	H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=naf1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04410	Gar1	Gar1/Naf1 RNA binding region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038664	Homologous_superfamily	H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain	Interproscan
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR040309	Family	H/ACA ribonucleoprotein complex non-core subunit Naf1	Interproscan
IPR007504	Family	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31633	H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000493	Biological Process	box H/ACA snoRNP assembly	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005732	Cellular Component	sno(s)RNA-containing ribonucleoprotein complex	Interproscan
GO:0042254	Biological Process	ribosome biogenesis	Interproscan
GO:0001522	Biological Process	pseudouridine synthesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14763	NAF1; H/ACA ribonucleoprotein complex non-core subunit NAF1	-	Ribosome biogenesis	ko03009	deepkoala