Gene detail

Detailed information of Pocillopora_acuta_HIv2___TS.g5347.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000004:4300892...4315003
NR annotation: XP_027051457.1, peroxisomal targeting signal 1 receptor-like isoform X1 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Pocillopora_acuta_HIv2___TS.g5347.t1

ATGAATGCTGTTTCATTACCTAAGATCGTAAATGTACAAGAGAGTGGCAAAGTGCACGATGCCATGGCTAAAAATGAATGCAAAGTTTTGCTTCTGTGGTTTGTGAGTCTGTTGATCTATAATCTTAACAAGTTAAAAATGGCAATGCGGGATTTAGTTGAGGGGGAATGTGGAAGTGCTAATCCTCTGATGAAACTGGCGACTCACTTCACACAAGATCAGTCATTTCATCAGGAGGGTCTTGTGCAAGACAGGTTTGGACCTCCCAGGGAACTGGGTGAAAGAGCTTTTCATGAGGCTCAAGAAGACCAGTTGGTGTCAGAATTTCTTCGTGATCCACGAACACATGCTCCTCCCCAGTCCTTTCGTATGGGTGATTTGCTACATGAAATGAAAGAAATTGAACAAAGAAACCAGCATCTTACTCCAGTTAGAGCTCCTGGAATTGCTGATCTGGCATCAAGTGAATGGGCTGCTGAATACATGTCATCTGAGGTGCAACGAGCTGAAGAATGGTCAAAAGAATATGTACATGAAACAAGATTTCAACCAAGAGCTGGTGTCCAGGATTTTCCAACTAAATGGGCAGATGAGTACCTGGAGCATGTTAGGGACATGGGACATGAAGGCCTGGATGATGCAGCATGGGTAAATGAATACAAGCAAGAAGGTGAAAATGCTGAACTATCCAAGACAGCTGGGGAGCTGCTCGAAAATGCTGAGGATCCAAAGTTTGCAAACTCAAAGTTTATGAAGTTTGTAAAGAAACTTAGAGATGGTGAATACACAATTGAAAATAACCAGGTAATTGACACAAAGACTGGGCAGGAGGTTAATGAAGACACTGAGGCTGCAGAAGAGTGGGTGGATGAGTATGAGAAATTTAGGTCAACTGAGGCTGATGATTGGATCAAAGAGTTAACATCTGCAGCCCACGAACAAAAGTCAAATTTGGAATTTTGGGATCGCTTGGAAGGAGAGTGGGATGACCTAATAAGACGTGATGGTGAAGACGCTCATTCCTGGTACAGTCAAAGTGATGCTACAGTGAACAAGGAGTATACTTTCGAAGAAGATAATCCACTCATAGATCATCCAAACCCGTTTGAGGAGGGACTGAAAAAGCTCAAAGAGGGAGACTTGATTAGTGCTATTTTGTTATTTGAAGCAGAGGTTAAGCAGAGACCAGAACATGCTGAGGCGTGGCAGTATTTAGGAACAAGTCAAGCAGAAAACGAGCAAGATATTGCAGCAATAATTGCTTTGAATAAATGCCTCGAATCACAGCCAGATAATTTGACAGCGCTTATGGCTCTGGCAGTAAGTTACACCAATGAATCCATGCAATCACAGGCCTGTCGGACCTTAAAAGCTTGGTTAAAGGCTAACCCACGGTACAATGACCTAGTGGCTAATGAGCCCGCGGGATCAGAGACCGGTGCGCGGTCGCGGTTAGTGACGTCATCAATTATGTCATCGGAGATGTACAATGAGATAAGAGACTTGTATATCACAGCTGCACAAAGGGCTCCAGTGAACGATATCGATGCAAACGTACAGGTCGGTCTCGGCGTTTTGTTTAACTTGTCTGGGGAGTATGACAAGGCAGTCGATTGTTTCCAGGCCGGACTGCACGCCTTGCCAAATGATGCTCTTCTATGGAACAGATTAGGCGCCACGTTGGCGAACGGCGGGCGCAGCGAGGAAGCAGTCGATGCATACAGACATGCGCTGAATCTCAGCCCGGGGTTTATCCGGTGCCGATACAATTTAGGAATCAGCTGTATAAACTTGAATGCTCACAGACAAGCGGTGGATCACCTGCTAACTGCGTTGAATATGCAGAGAAAGGGTACAATTGGACCAGGGGGCTCAGTCTCTACAATGTCTGACAACATTTGGTCGACGCTGCGCATGACTCTGTCACTGATGGGCAGGTCGGACCTCCATAAAGCAGTCGATACACGTGACTTGGATCATCTCAACGCAGTCTTTCACGCGGATTCGCACAATGATGGAGCGATTACTGTTTAA

Transcript

Pocillopora_acuta_HIv2___TS.g5347.t1

Protein

Uniprot

Uniprot term	Description
O70525	Peroxisomal targeting signal 1 receptor OS=Cavia porcellus OX=10141 GN=PEX5 PE=2 SV=1
P50542	Peroxisomal targeting signal 1 receptor OS=Homo sapiens OX=9606 GN=PEX5 PE=1 SV=3
Q1RMV0	Peroxisomal targeting signal 1 receptor OS=Bos taurus OX=9913 GN=PEX5 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13432	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024111	Family	PEX5/PEX5L	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10130	PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005052	Molecular Function	peroxisome matrix targeting signal-1 binding	Interproscan
GO:0005778	Cellular Component	peroxisomal membrane	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0016560	Biological Process	protein import into peroxisome matrix, docking	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13342	PEX5, PXR1; peroxin-5	-	Membrane trafficking	ko04131	deepkoala