Gene detail

Detailed information of Pocillopora_acuta_HIv2___TS.g6227.t1a in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000001:4926312...4933310
NR annotation: CAH3039809.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q5XJS5	THO complex subunit 6 homolog OS=Danio rerio OX=7955 GN=thoc6 PE=2 SV=1
Q6AY87	THO complex subunit 6 homolog OS=Rattus norvegicus OX=10116 GN=Thoc6 PE=2 SV=1
Q86W42	THO complex subunit 6 OS=Homo sapiens OX=9606 GN=THOC6 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR042626	Family	THO complex subunit 6	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44411	THO COMPLEX SUBUNIT 6 HOMOLOG	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000346	Cellular Component	transcription export complex	Interproscan
GO:0000347	Cellular Component	THO complex	Interproscan
GO:0006406	Biological Process	mRNA export from nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13175	THOC6; THO complex subunit 6	-	Spliceosome	ko03041	deepkoala