Gene detail

Detailed information of Pocillopora_acuta_HIv2___TS.g6316.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___xfSc0000001:6740921...6750869
NR annotation: XP_027037363.1, MTSS1-like protein isoform X1 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Pocillopora_acuta_HIv2___TS.g6316.t1

ATGGGCGACAACGCGGACAGCGAAGGCAACTTGATTCACTTGATACTGAACGATTTAAAGTCTAGCGCCCCTGTTTGGGAAGATTTCGTCGGCAAAGCAAGCAAACTACACTCGGCGCTCAAGGCAACAGTTGTAGCTGCTGACGCTTTTTTGGACGCTTTTCAGCGAATTGCGGATCTGGCGAATTCATCACGAGGATGCTGCAAAGACATTGGAGGCTCTCTCACAAAAATGGTGATAAGACATCGCAGTGTGGATGGTAAACTCAAAGGATTTGCTGGATTGCTAAATGAGTCACTGATATTTCCTCTGCAAGAGAGGCTGGATGATTGGAAAAAGTCTGTTGTGCAGATGGACAAAGATCATGCAAAAGAATATAAGAAAGCCAAACAGGAACTAAAAAAGGCCACAGCAGAGACAAGTAAATGGCAAAAGAAGGTTAAAAAAGGTGAGTTAGGAAAATCAGAGCACCAAGAAAAGTTGGATGCTACCATGAAGCAAGCAAGTTATCAACAAGCTCTTTTTGAAGACCAGGAAAAGCGATTCCTTCAGAGAGCGTTGATCGAGGAAAGGACCAGATACTGCATGCTGTCAACTTGTTTTAGGCCAGTTGTGGAGCACGAGATGTCCATGTTAGGGGAACTAGAACACCTTCAGTCTGTTCTCGAGGACATCGTTAAACAAACAAAAAATCCCACCGTTCTGCCACCAGCGGGAGAGGATCTGGTGCGAGAATTCAGATTGTCGGATCATCATAATTACGATGATCAGTCTCCTCCACCGAGTCCAACAGCAACTCTGACGAGAGCTGCAAGTCCGCTGCATACCGGCCGGGACCCCCCTACCACCCCTCCTCCGCCGCCTCCCTCGGAAACGGACCCCTACTACAACGCTTTCAGCCGGCATTATTCATTCTCCGTCAAACACACTCAAACGCGGAACAAGGTCATTGGATCGGTGACACCCACCACCTCTCCTAAGAAAGTCGCGCCTCCGCGGATCTGCGCACGCTCTACCAGTTTTAGTGTTTCTTCGACCTCCTCGCACTCTTCAATGTCATCTTTAGGCTCGTCTATTGGGTCGCCGTCAATTGAGAGCTTCCCGCAGCCGCCAACCCCGCTGCTATCGCCCGGTTACTCGGGAGACTTGCAGAGCGAACCATTACCCCCTCCACCCTTTCCTGGAGCAGTGCCCACCTTACCCCATCCAGGCAAGTCAAGTATTGTAATTGTTTTTGTCAAACTCGATTGGTTGATGATAGACACTGCAACGAAAGGCGACAGAACATCTTGGACAACGTCCACGGATTCCGGGTGTTATTCGTCTTCCTCAGGGGAAAGGTCACCTTCTGCCTCGCTTGCACAAGTATATCTTCCCTCCTCGATCGCGGAACACCCGAGATCCAACGAGCTTTCAGGAAGGAATACCCAGGACCCTCAATACGCCACGCCTTACGCTGTTAGCAGCACTCGATCACGGTGTATGAGTGAATCGGCTTCCGCTATGTCGCCTTACTACCAAGGAATTGCGCATCGACGTAGCGACAGTGAGACTTCCTCGCAAAGCAGCTATTCAGGCAACGGCGAGGTGCCGGCTGGTGGCATGAACAGCAGCGATTCTGGATATTTTAGTTATGGAGGACGTTACCATCGCTCGAATCCGGAAAGTATACAAGAAAACTCAGGCGGTTGGGCGCCCCAGCAGAAAGCGAAGTCCACGTACAATAGGAGTCAAAGTGTATCAGGGCGACCGTCTGCAGCTCAACAGGCGCATCTGGCAGCTCTGGCAAGTCATGCCGCGCGAAGCAGAAGTGCACCAATGCCTCCCGCAAGGAAATCATCTGTTCCACCGCCGTGTCCGGAGAGAAGGACTGGACTTTCTGATGGTGAACTGAACAAGGAGGATCAGGAACTGGATGAAGGCGCTCACTCGGATGAAGAAGGGCTAAGTATGCTACAGAAACAAATTCGGCGTCAGAAAAAGCTGATCGAGGCCAAGGCGAAAGACAAAGGCGAGCAGTCTTGA

Transcript

Pocillopora_acuta_HIv2___TS.g6316.t1

Protein

Uniprot

Uniprot term	Description
Q6P9S0	Protein MTSS 2 OS=Mus musculus OX=10090 GN=Mtss2 PE=1 SV=1
Q765P7	Protein MTSS 2 OS=Homo sapiens OX=9606 GN=MTSS2 PE=1 SV=1
O43312	Protein MTSS 1 OS=Homo sapiens OX=9606 GN=MTSS1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08397	IMD	IRSp53/MIM homology domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013606	Domain	IMD/I-BAR domain	Interproscan
IPR030127	Family	I-BAR domain containing protein MTSS1/MTSS2	Interproscan
IPR027267	Homologous_superfamily	AH/BAR domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15708	ACTIN BUNDLING/MISSING IN METASTASIS-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0007009	Biological Process	plasma membrane organization	Interproscan
GO:0003779	Molecular Function	actin binding	Interproscan
GO:0005543	Molecular Function	phospholipid binding	Interproscan
GO:0015629	Cellular Component	actin cytoskeleton	Interproscan
GO:0030031	Biological Process	cell projection assembly	Interproscan
GO:0031235	Cellular Component	obsolete intrinsic component of the cytoplasmic side of the plasma membrane	Interproscan
GO:0061024	Biological Process	membrane organization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20128	MTSS1; metastasis suppressor protein 1	-	Membrane trafficking	ko04131	deepkoala