Gene detail

Detailed information of Pocillopora_acuta_HIv2___TS.g8165.t1a in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000003:4330832...4340522
NR annotation: CAH3040991.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

Pocillopora_acuta_HIv2___TS.g8165.t1a

ATGGAACTTGAAAATATGTCAGACAGATCTCATACCCAAAACTTAATGGCCAATGATGCATTGGAATCTGTGTCACCAAACAATGAATTTGATATACATATTAGACAAAAGGATGAACGTTATCGACTGGAGAGGACATCTGGCTGTTTAAGTGGATTGTTATCAAGTGGTACTTGTCTTGAAATCAGAGGACTGTTTACTCTTGCATGGCCCACTGTGTTTTCTTATTTTTTCTACCATTTGATCTCCATGATAACCCTGTTTTTTGCGGGACGTCTTGGAGAAGTTGAACTAGCAGCAGGGACATTAGCTATTTCATTTGTCAATGTCGCGGGACCATCTTTGTTCACTGGTTTGTCTTCAGCTTTGGAGACATTAGGCTCGCAAGCTGTTGGAGCCAAGAACTATCGTATGGCAGGCATCGCATTTCAGAGAGGGATTTGGATATTGGGTATTGCATGTATATTAACCTGGGCACTCTGGATCAATGCTGAACTGCTGTTGCTGAGAGTAGAACAGAAAAGAAATGTTTCCCACCTAACACAGGAGTTTACCCTTACATGCATTCCTGCTTCAATAGCTATCTTCATGTTCTTTCTATTACAAAGATATCTTCAGACCCAGGGTGTTGTCAAACCAATTCTTTATGTTGGTGCTGTCTCTAATGCTATTCAGATTGGTGTAAGTGCATTGATGGTATATGTCCTCAAATGGGGTTTCAGAGGGATTGCCATCAGCTGGTCTTTTACCAATGTGATTCTATTTTTGTTGACCTTTGTTTGTATGAAGGTTATGAAGTTGGATGCAAAAACATGGCCAGGCTGGACCATAGAAAGTCTGTTAGACTGGGGACAGTTTATCAAGCTTGCTGTGGCTGGAATGGTGATGATTTGTATTGAGTGGTGGAGTTTTGAAATAGGATCATTTCTTGCAGGGTCGTATGGTGAGTACCAACTGGCCACATATGGGGTAATTTTCCAGTGGGCCGCATTTCATTTTATGATTCCTCTTGGAATAAGCATTGCCGCTGGTGTCCGTGTTGGAAATGCTTTGGGTGCTGGCGACCCAGCTGCGGCAAAAAGGACGGCGAAAGTGGCCATTGGACTTATCGTCTGTATAGATCTTGTTGTGTTTGCCATTTTCTTTGGACTGCAAGACATGACTGGAAGAGTGTTTACCGATAACAGCGAAGTGTTGTCATTATACAGAAAGAATATTCGCTTCATGTCCGTCTATTTTCTCTTTGATGGAGTCCAGGGTGTTTGCAGTGGTATTGTCCGAGGATCAGGCCGGCAGACGATAGGAGTACTGATAAATTTTGTGGCCTATTGCTGTATTGGGCTTCCTTGTGGGATAACGTTGATGTTTTTAGTCTTCCATGAAATTACAGGTCTCTGGATAGGCTTGGGGATTGGAGTCGTATCTCAGGCGTCTTTATATGTGATTCTACTCTGGAGAACAGACTGGGAGAGGCAAGCACAGCTGGCGAAAGAACGAACAGCAATCAAGGCAGCGTTGTACAATGTATCAGAGACTTGGATAAATGTAGAAGTTACCAGAAGAGAAAGAGATGCGGTGCTGTCCAGCTGGATTTACAAGACCTCATCCCTTCCATTCTTAAGCCGATTTCATGCCGCAAACAATCATTTTGAACTCTTGACTAGTGACGGGAACAAACGGACTGAGTGTAATGGCGAACTTGAATTTAACCTAGAGGACAGTGCGTTAGAAACAGCGTGTGGTACAAATCATCATATTAGACTAACATCATCAGAGAAAAAGTCTCTCATTATAAAACGTCTTATTCCGTTGGGTATTTCATTGCTGTTATTAGGTGCCGCTGTATTTGTCCGGTATTTTGTTCCTTTACCGCCCTCATATGAAACAGTGACCGTTGACAATAAGACAGTTAGTGGTAACATTACTGGTAATTTCACCACTCAAGCACCCGTCCCAACTAATTTGCATTAA

Transcript

Pocillopora_acuta_HIv2___TS.g8165.t1a

Protein

Uniprot

Uniprot term	Description
Q3V050	Multidrug and toxin extrusion protein 2 OS=Mus musculus OX=10090 GN=Slc47a2 PE=1 SV=1
A1L1P9	Multidrug and toxin extrusion protein 1 OS=Danio rerio OX=7955 GN=slc47a1 PE=2 SV=1
Q5I0E9	Multidrug and toxin extrusion protein 1 OS=Rattus norvegicus OX=10116 GN=Slc47a1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01554	MatE	MatE	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002528	Family	Multi antimicrobial extrusion protein	Interproscan
IPR045069	Family	Multidrug and toxic compound extrusion family, eukaryotic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11206	MULTIDRUG RESISTANCE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015297	Molecular Function	antiporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0042910	Molecular Function	xenobiotic transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:1990961	Biological Process	xenobiotic detoxification by transmembrane export across the plasma membrane	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03327	SLC47A, MATE, DTX; MATE family, multidrug and toxin extrusion protein	-	Transporters	ko02000	deepkoala