Gene detail

Detailed information of Pocillopora_acuta_HIv2___TS.g9370.t1 in Pocillopora acuta

Genomic Location: Pocillopora_acuta_HIv2___Sc0000009:2836313...2844911
NR annotation: XP_027051801.1, APOBEC1 complementation factor-like isoform X1 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q9NQ94	APOBEC1 complementation factor OS=Homo sapiens OX=9606 GN=A1CF PE=1 SV=1
Q5R9H4	APOBEC1 complementation factor OS=Pongo abelii OX=9601 GN=A1CF PE=2 SV=1
Q923K9	APOBEC1 complementation factor OS=Rattus norvegicus OX=10116 GN=A1cf PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF14709	DND1_DSRM	double strand RNA binding domain from DEAD END PROTEIN 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR006535	Family	HnRNP R/Q splicing factor	Interproscan
IPR044461	Domain	A1CF, double-stranded RNA binding domain	Interproscan
IPR014720	Domain	Double-stranded RNA-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21245	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24978	A1CF; APOBEC1 complementation factor	-	Messenger RNA biogenesis	ko03019	deepkoala