Gene detail

Detailed information of Ppa0G003090 in Paragorgia papillata

Genomic Location: Contig00001:4024415...4039612
NR annotation: CAB3989264.1, RNA-binding [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Ppa0G003090

ATGGCCAGTGAAGCGAAATTTCAGGGCCTTAAACAACTTCATGATAAGCTACACTCAAAGAAAGGTCTAACTAATGTTGTTACGGTGAACAGCAATTGTTCTTCTAAAAATTCGAAGTTTATCCAGAGTGATTTACAGGTGGATGGCGAAGAACACGCAACGCAAAGTATGGAAGGAGCACGGACAACAGAACTAGCTGATGGTGCTTTGGAAGATAGCACCGCACTATTAACGAGAGACAGCTTATTAAACGCTGTGAAAGATATTTATGGAGAGAGGAATGTGAAACTGACAGAACATAAGATCTTTGTTGGAAACATCAGTTACAAGCTGACCACATCACAACTGAAAACGTTCTTTTTATCATTTGGCAGAGTATTACATGCGCAAATTGTTAAAGACAGGGTTAAGAAAAGGTCAAAGGGGTATGGTTTCATAACATTCAGCAAAGACTCTGAAGTTCAGAAAGTACTGCAGGCTTCAGAGGATGAACTTATTCTTGATGGAAGGACACTAAGGATTAACAGAGCTGAGAAAAAGAAAAGAGGCAGACCTATTCGTGAAAACAATGAAGAAACTGACCCTAAAACATCTATTGAGGATTTTGTCAAAAAATATGAAGCTTCAGAAGAGTTAAAGTGCAACCAGACTGAAGAATGTGAAGAACTATTTCCTGTTGAGGGTGGTACCAATTGTTCTGATGATGGAATTAGAATGCATGATTATATTGTTTACATCTCAAGTTTAAATGATGATACACTGTTGTATATATTTTCACTTTTAACTATCAAAGAACGAGTTATCATTGAAAGAGTATGTCACAGATGGCTTCACTTATCAAGACAAACATGGCTTTCTCTTACCCATTTGGACTTCAAAGGAGTTTTTAGATCTTTCAGAGGAACTGGAGGACTGACAGACGGAATTCTCTTATCACTCTTTCGAAGAGGTTGCCAAAACTTAAAATCCTTAGACGTGTCCCATTCGTCAAGATTTCTAACAGACTACTCTCTCTATCTTATCGGTCAAAATTGCCTTGAACTTCAAGAACTTAATCTTTCTGGAGCCAATGTAACGATGAAATCCTTAAAAGATTTGAGCAGCAAATGCATCAAGTTGAAGAAAATAGAGTTACAAAGATGTTACGAAGTAGGCGAAAAAGCATTGTGGTGGCTTTTTAAGCAGTGTGAAGAACTCGAATATATCGACGTTGGAGGAAACATTAGAATTACAGGACAGTGCTTTTTCATGCTAACAGACAAGTGTACAACTGTTATTTTAGATGAATGTATAAAGCTTACAGACAGCGGAATAGAACTGTTAATAAAAAGATGTCGTAATCTAGAAACACTAAACATTTCAAATTGTTTATATTTAACGGATCGAGGAATTTCAGAATTATTTACGAGGTGCATGAACCTGAAAAAATTGTCATTTTGCAAATCACCCAAAGATGTGTCCTCTCAAAGTCTGCTGGCGTTAAGACATTTAAATATGCTAGAAGAACTTCAGTTAGCGAGTCAAAGTGCAGTAAATGACGATGTTTTATTTGTCATTGGAAGTAATTGTTCTCAACTCAGAATCCTAAACTTAGAAGCTTGTCATAATGTGACTGATCGTGGAATCCAGTGTCTGACGTCGTGCTCTCAACTTCACAAACTGGTTATTAGCTATATTGACAAGGTGACAGATTTTGCTGTTGAACTATTAGCCCATAATGGAGTTATACGAGAGCTGCATGCTCGTTCATGTTTAAATATAACGGATAAAGCTATTGAGCAGTTAGCATTACACTGTCCCAACCTACACGCACTAGACCTGAGTGGATCAGAAAGAATAAGAAACAAATCACTGGACCTTTTAGAAGAACACTTAGGGGACAATGAAGCTATATGGTTGGCGCTTGGAGGCACCGGCATAACAAACGAAAGAGTTCTGCTTACTCAGCAACACTACCCGACTTGGGATATAACAACCCAGAACCTGTCAGATCATCATTTGCGCACTGACTTTGATCCCTACATGGATATGGGATGTATCCTACCCGAATATGACGACGAGGATGAGGAAGAAGAATTTGATTTGCCCGCGCAGGAATACGACGCAGAGTACTACCTAACAGCCGATGACCCCTCAATGTGGGAGTACGAAGAACAGTGGATGTCGTAA

Transcript

Ppa0G003090

Protein

Uniprot

Uniprot term	Description
P28644	28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1
Q39061	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1
P48809	Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila melanogaster OX=7227 GN=Hrb27C PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00646	F-box	F-box domain	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001810	Domain	F-box domain	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13318	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0019005	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0031146	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan