Gene detail

Detailed information of Ppa0G004120 in Paragorgia papillata

Genomic Location: Contig00001:5484015...5501769
NR annotation: XP_028400700.1, RING finger protein 10-like [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

Ppa0G004120

ATGGGAGACGGGCTGAAAAATATGGAAGGGATAAGTCAACATATTCGCCCTTCAAGACAGTCGAGCAATTCTCCTACCCAGCAAGGTAATTCAGCCAGGTCATTGGCTAAACCCAAAGGTGGTCAGTTCAAGTCGCAGAAGTTTGGTAAATCATGTCCTTCAGCAAATGGACAGCGTAGTGTTTACCCCAATCAAAGTAAACCAAAAGGACATCAAAATCCTCAGAAGAAAGGTTCCTTGGTCGACAAACGACCTCCAACGAGAGGATTTACCAAGCAAACTGAAAGATTTAATCAGTTATCTGTTGAAGATGATGACCTTCAATTTAGTTATGACTTTCCTGTGACATCAAAAAAGGACCAGACTTCTTTAAACCATTTGCTCAACTTTACGTTTACTCCACGAGAGCATGCACAGCATGTTTCATCAAGCAGGAAAAAGGGTGTAATGAAAGCCAATTCTTATAACAAGGAGCAGTTTTTACAAGCAAATTGCCAGTTTGTTGTTCAAGATGGTGGTGATTATGCTATTAATATTGTTGATCCAGATGTGATTGTTGATTGGGAGTTGATTGAGCAAGTGCGTGTTCGCTGTAGGGAAATGCCATCCTGTCCCATCTGTCTTTACCCTCCAACTGCAGCACAAGTAACTCGCTGTGGTCACATCTATTGTTGGTCTTGTATCTTACATTATCTTTCTTTGAGTGAGAAAACATGGAGAAAATGTCCAATTTGTTATGAATCAATTTATAAGAAGGATTTGAAGAGTGTTATGGCTGTATCAGAACACAAGCATTCTCATGGTCAGCAGATTACAATGACATTGATGAAAAGAACAAAGGGCTCTGTGTTTGCTTTGCCTAAAGTGAGATGGGTTGAAAGAGAGTCTGTACCACTATTTGCATCTGATGAAGTGGAGATGCAGTTCTCTAAATTGCTTATAGCATCGCCACAGGAGATTCTTACAAAGATCATGGCAAAAGACAGATCTGAATTGAAAGGTCTGCTTCTTGAGGCCCAGAATGACAAGTCTGATGAAGAACATTTTGTAAAGTTAGCGCTTGAGGAGTTTGAGAAAAGAGAAAAACGGCTCTTGGAAATGTGTGATAAAGAACCAAAAGACATCCTGGTTGAAACCGAAGGCGACATTCTGATTGGTAATGTTGAAAAAAGCTTTGAAAATAGAAACCTGGAAGACATGGAAGATAAGAACGTGCTTGATGAAACTGGAAGTGAGTCCCCCATTTGCCAAGCAGAAAGCATCAGTGTGGGACAAGATTCTGCAAAAGACGAATGCAGTCGGACTTCAGTATCGTCTGATGATTCAGTCTCATCATTCAAATCATCCGCGAGTTCACAGTCCTATTACTTTTATCAAGCTCAAGACGGACAACATATCTTCCTTCATCCAGTGAATGCTCGATGTTTGATCAAAGAATATGGCAGCTTGGAAAATTGTCCGGAGTCTATCAGTGGTAATATTGTGGAAATGGAATGTTACTCCCAGACAGAGGACCTGCGTCAGCGCTTCCGTTACCTTCGACATTTACCTCTGACTTGTGAGTTTGCTATATGTGAACTCGATTTAAAGCCACCAGTTCTCTCAAGGGAAACATTGAATTTCTTTAAAGATGACTTGAAGAAAAGACGCGTGCGTCGACAGAAGAAAGCAAGAGAGGAGGCCAGACATGAGAGCAAATGCAGTTCCAAATTTTCCGCGTTCACAGGCATAAAACAACCGCGGCGAATTAAAGCAGATGCTGAAACTCCTGACTTGACCAGTGAACAAGATTTTCCACAGCAAGTAGGATCTGGTTCTGATGTCTGGATTGCCTCGTCTCCACCAACATCAGGTCCATGGTCTAGTATTGTAGCAGATGATGATAAATCACCGCCTGGTCCTCCGTCTTTTGCTAAGGCTTTGTCTGCAGGCAAATGTTCTTCTCAAAGACCCAAAGTGAGAACACAGTCTGAAGGTTCTCGTACTGATGGAGAGAAATGCTCAGAAGATGAAGAATGTGATGTTGTTCCTTCGTTTCAGTCTGCTTTTACCGATGCGCTCATGGTGGCTGACTGGAATTTGAACGTTAAGAGCGTCGCCCAAGAGAACAATTCTGGCGGCAGAAACAAGAAAAATAAACGGAAAAGCAAGGAAAAGAAACTGTTGTTCAGTACCGGTAGTGCAATGAAATTGTAG

Transcript

Ppa0G004120

Protein

Uniprot

Gene family

Uniprot term	Description
Q3UIW5	E3 ubiquitin-protein ligase RNF10 OS=Mus musculus OX=10090 GN=Rnf10 PE=2 SV=2
Q5XI59	E3 ubiquitin-protein ligase RNF10 OS=Rattus norvegicus OX=10116 GN=Rnf10 PE=2 SV=1
Q08E13	E3 ubiquitin-protein ligase RNF10 OS=Bos taurus OX=9913 GN=RNF10 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13445	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR039739	Family	RING-finger protein MAG2/RNF10	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR027370	Domain	Zinc finger, RING-type, eukaryotic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12983	RING FINGER 10 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000976	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K26979	RNF10; E3 ubiquitin-protein ligase RNF10	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala