Gene detail

Detailed information of Ppa0G005290 in Paragorgia papillata

Genomic Location: Contig00002:412027...436540
NR annotation: XP_028400883.1, RIMS-binding protein 2-like isoform X1 [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G005290

ATGGCTTCGAAAGCTCCCGTGACTAAAGACATTAATACGCTTGGGGAAGAGAAAAGAACACACTCTCAGCAGGGCGGATTGGGGACGTTATGGAGCAACCAAGATGAAATGAAACGATATGTTTCCAAACTCAAATCAGAGTTGGACGAACAGAAGAGTCGAGTGAAACGCGTACATCGAGATAAAGCTGAGGAAATGAAACGACTGCAGGAGAATTTAGATAACGAGAGACAGAAAGCTGTCGAGAATGTTTCAAAGAAACTCGAAAGCGATAAAGTGTACGAATTAAAGAAACTCAGAGAAAGTGTTCTGAAGCAAAAGGAATCTGAACTCAGGCAAGTGCTACGACTGAAGGACGAAGAAATGCGAGCACTGAAACAGGAATTGCAAGATTCTAGGAATACGACTAGAATCTTAGAGCTCGAAAATAAACGTAATTTAAACGAACGACAACGGGGAGACACGGAGGAGCAAGATCGACGTTTAAGGAACGAGGTGGCCGCTTTAAGAAACGACAAGAGACGGTTGGAAGAGAGTTTGAGGATTAAAACCGATGCGGATTTTGAGAAAGCTGAAATGATACGAAGAATGAAACATGAACACGATACTGAATTGCATCGACTTACTCGAGAATCGAAGAGAGAGTCTTTAAAAGAATTTCGACATCTAAGAGCAGTTTCGAGAGAAATCGAAGCAAAAAATTCTCAACTAGCGGCCAAAGAGACAGAGATGCGACGTCTGGAGCAGGAGAAAAATTCGTTGGGAGACGAGCTGAACTTGCAACGTAAAAAAATCCCTTCCGACGGAAATTTAAGCAAAAGTAACTCGTTTAATTTACAACAGAGACCTAAAGATCTTTCAGCTTCGTCTGATTTTGAGAATGCCACTGAAGACCGAATTAAAAAACTGAAGATGAGGAACACTGAATTGGTTGCAATTGCTCGGAAACTGGAAGGAAAGGCAAAGCGATTACAGGAAGAAAAAGATATATTCAGAGGCAATTTTAATTTAATTGAGCTAAATCCTGAGGTTGGAAATTTAAGGAAAGCTTTTGCACACCAGCGAGCGAAAGACCTGGCAGAGCATGCCAAGCTGTTAATGAATAAAGATCATGAAATTGATAATTTAAAGAAGGAATTAGCACAACTAAACAACTGCAGCAGTAGTGTCACTGAGAATGGAAATGTTGATGACCTTGAAAAAATAGTTCAACAAACAGCTAAAGAACATCTCTTACTTGAAAAACAACTTTCTTCAAAAGGAGAGGTTTTGGCAGAGGAGAACAAGGAGATTAGTGCAAAGAATTTGAAACTGTCCAATGACAATGAAATTCTTCAAGCTGAACTACGTAAACTCCAAGATGTTGAAACCAAACACTTTAAAACAGTATTTGAAATGAATCAAATTAGGGAAGAACACATGAAACTACAACATGCAAGTTCCGAAAAAGACAAGAGGATTTACAAACTGGAGTTAGAAAAACAGACTTGCGTTGCAAAGAACAATGCATTGCAGAAGAAGAATAGTGAACTGTCACACAAAGTAGAAAAACTAGGAAAGTTGGAGAATGAATGTTCAACATTAAAAGAAAAGTTGGAAACATTAAAGAATGAGTATGACATGTTGAGAGCAGAAAATAGTAAATTACGAGCACAAGTTGAAAGTTTATCCACACTTAAAAAGGAAGTAGAAAGATTGCAAGAAGACAATCTGGGTCTTCAGAAAGAAAAAGAAGCTTCCGTCTTTGAGCTGGAAGAACGAGAGAGAGAAATCTCATCTCTCCACAAGGCTCAAAGTGAAGCCCAAAAGAAATACGATGAACAAGTGAACGAACGCGATGAAATGATCCGTAGGCTCAAGGAACAACCTGCTCAGACTTTAGAGAAAACGAATGTGGAGTTTCATAATCCTTCTCTAATTGGTACTCCCGTTTTGAGTTCAACCCCAAAGACCACTACGTTTACCCAAACTTCGCGTCCTTCGTCACCCATATTGTCCCCTATTAATGATTATCGCTCTGAGGATTTACAAAAAGCTGAAGAACTCAACAATCCCAGTGAAGCTGACAGTCAAGTTCTAGATTCATTACATGTACCTGATTACTACGCGACTAGTTCGTCCGCTAGTTTTGATTTGGAAAAGGCGGGAACTCGTATTGAACAGCTAGCTGCGTCAGATTCCGACGAAACAGATTTTGAAAGTAGTCGACGAGCAACAATCGATTCTCCTTCAGCATCTTCAGATATTAGTGATTATTCCGAAGAAGATAGTGATCGTAGTTCAAGTGAGAACGCAAGTTACAGTGCTGATGTTAGCCACACAAGTGACGTGGAAGAACCTCAACGAACAACTAAAGAGGATAGCAAGAAAGAAGTGAAAAACGACGAAGATGAAGAAGATGTTTTTATTGGCAATCAAATGCACGAATCACCTGATGTTGAGGAGAAGCTCTCGATCTTCATAGCGAAATATAGTTATGATCCAATGTTGTACTCTCCGAACGAGAATCCAGAAAGTGAACTCGCATTTCAAGCAGGAGATTATCTTTACGTCTATGGCGATACCGATGAGGACGGGTTTTTTGTCGGTGAATTAATGAATGGAGAACGAGGTCTTGTTCCGTCAAATTTCGTGGAACGAATTGCAGACGACAGTTCTGATGAAGAAATTACTTTAAAAGATGAAGATGGCAAGAAGAAAGTGATTCGACCCAAGGCTTTCTCTGAGCGTCGTCACGAAATGTTTCGCACGTCATTGGATCACATGCTCAGTGACCAACTGGAAGATATCCGAGAATCCGAAGAAGAGGACTTCGGCAATAGTTCGGTTTCCGAAGATGAGCTCGGTGGCAGGAAACGCGAAAATAGGAAAACCGAGGCGGACCAGAACTTTAGTGATAGTGATGGGTTGGATTCAATGGACTCTGATCCCCCACCTCCACGTGTTCCGTCACCTACCAAATTGTCTTTGGATCGGCAGTTTACAAAGAGTGCGTTGATTAGTTGGCAAGGTGCCAGTCTGCCGAATGAAGAGATACAAGGTTATAATATTTATATCGATGGAAGACTTAAAACTCAGGTCAAAGGAAGCAAAAAAACTAACGCTCTACTTGAAGATATCGATCCCAATGAGACTTATCGGTTATCTGTTCGAACGAAGTCAGTCAATGGAAAGGAGTCACCTGACTACGCGGCTACGATGGTGTGTGGGACAGACGCCAAACTTTTGCCTTACAATCTCCAAATATTGCACGTCACTCAGACATCGGCCGAGGTGGACTGGGTACCAGCAAACAGTTGCTATGGTCACGAGGTCTTTCTGGACGACTCGTTACTGCAGTGCGTGAAGCCAGCGGTTTCCAGTTACACGTTATGCGACCTTAGTCCTTCGACGCTCTACCGTTTGCCTGAACCACCTGTGGACCTGCGTCTTGAGCAGCAAACAGCGGAGAAAATCATTCTCACTTGGCTTCCGGTTACCATCAGTCCAACTGGCTATTCCAACGGTTTTAAAGTGAGTGGTTACAAAGTGTATGTGAATGGCGTCTATTGTACTGAAACTGATTCTGCGTCGTTGGATAGTGTAAACATTAGCACTGAAAGACTTCGTAATCTCGGGAAACGTCATGATTTTACGCGCATGCGGTTTGTCGTTCGAACGCAGTCCATCCTAGGTGAGTCCACGGACTCGAATGTCGTTGAAGTATCCAATGAGGGAGGAGGAAGTGTAACTGAAAGTCAGTTATCAGTGGAACAACAGGATTCAAATGAAACTGAAGTAAGAACTACGAGCGATAGTAGCGCTGTAGCAGAAGCTTCGTGCGCAACAGAAAACGATATACATAAACAGATTGAAAGTAGTAGTCAACAAATCAGTGATAATGTGCTAAGTGATCTCGAACGGAAAACGGGAACTTCCGATGGACTTCCGAATTCTATCGATTTGGAGACACGACCAGACGAATCTCATTCGTTGGTGGATCTTAGTCCATCCGTTGCTACTGGCAACACTGGGGATGATGATGATAATAATAGAACCAATGAACAAAAGCGGGAAGATTTTATGACGGCGACTCACGATCTACGCTCGGATGACGATCGCGGAAAGCCGGTCGAGCCTTATTCGGCCGAGTACGCTGTCGGACAACATAAGGAGGCTCATTCGGCGGAGGAGTCTGAAACGTCTTCTACTACTGACAATATTGAGGAACACAGTGAGACTAAAGAACATTATATGGGCTCTGGAGATACTGCGTCAGCATTCGCCGATGAGCTCCCGAGTGCTGGCCGTAGGAAACCGAATGTTATACATTATGACATTGATGACGACACCGAAACTGAAAGTTGCACCGCTGAATCAAAAACTGAAACGGAAGAGATAGCTACGAATGAGAACAAAGACGGAAGCGAGGTAGAACAGGTAAAAGATTCAACTGCTATCCCTAAAGAAGATCAAGGATTACCAAACATGACCGTGTCAGACAGACAGCAATCAGAAAGTGAAACGGACACGGATTACGAGGAATTATTGTCGGTTATCGACGAAGTTGACGAAGAAAATTTAACAGAAACCAGCAACAATAGTTTGACTGAAAATCCTGACGAGGATATATCGAGTAATGAAGATCCCACGATTTCTTCAGGCAAATTGAACTCGGTCGTTTCTAACTCGTCTAAGATCTCAGCACGTTCTGGGAGTAAAACAAGAACGTTGAGCTCTGAAGATGAAGGTTTTCGAACGGATGATGATGTTCTGGATCTCTTAGACGATGATAATGATGTTGCTAGAGACAAACCATGGGAAGGCGAGGGATCAACTGGGAGAGAAGAACCATGGGAAGGCGAGGGATCAACTGGGAGAGAAGAACCATGGGAAGGCGAGGGATCAACGGGGAGAGAAGAACCATGGGAAGGCGAGGGATCAACTGGGAGAGAAGAACCATGGGAAGGCGAGGGATCAACGGGGAGAGAAGAACCATGGGAAGGCGAGGGATCAACTGGGAGAGAAGAACCATGGGAAGGCGAGGGATCAACTGGGAGAGAAGAACCATGGGAAGGCGAGGGATCAACGGGGAGAGAAGAACCATGGGAAGGCGAGAGATCAACTGGGAGAGAAGAACCATGGGAAGGCGAGGGATCAACTGGGAGAGAAGAACCATGGGAAGGCGAGAGATCAACTGTGAGAGAAGAACCATGGGAAGGCGAGGGATCAACGGGGAGAGAAGAGGATACTCACAATATTGTACCAGCAATGATTAACGGCGAACATACAGACAATGCTGTTCTTAATAACACATCTGCTGAAACGACTGAAGTAGGTGACTCAGCAAACAATAGAACTCAAACGAAGTTGAATGATGAAAATCAGGAAATGGATTCAAGTGATACATTATCGGATAAAGTAGAAACAAATGGAAATGCAACAGGAGACGATTCCAATGGAGATACCTCTGATTCATCGTATCCCACGAGAACTTCGTTAAACTCTGATAGTTCATTATCCAGCTCTGATCATGATGCGCCTCCTCCCCCAGATCGGGCACTGGATACTATAATTAAAACGTTATCGTTACCTGGCAACCGGGAGCTGGGGTCTGGGGAGAGTGACCCTAATAACGACAATGCGTATCTTGGGAGTGACTCGGAAAAAGCCTCGTTGCTGCTGTCGGAGAGTGGTCGGTCCGAGCCGGAAGGTGGTGATAACTTAACTGAACTAGTCCGGTTTTTTGTTGCACTGTATAACTATGATCCTTTGTCGATGTCACCAAATGCTGACGGCGCCGACGAGGAACTGCCTTTCACGGAGGGAGATTTAATAAAGGTATTCGGTGACAAAGACGACGATGGATTTTTCTGGGGTGAATGCAAAACACGACAAGGGTTTGTTCCTTCTAATATGATCTCGGAAGTCAGCATTGACGAAGCAGAAGACTTGTTCGAAGAAACAAGCAATAACTTGCCATCTTTTGAAGCAATAAATAAATTCCCTCATAAACAAATTAATGGTCATAGTGAACTTGATGTCGATGTTGATTCTGAGGACACTGACGTGAAAGACAGACTTTCGTTTTGGGAACATCTAGGAAATGGTGAACTGGAACCGAGGAAGATGCGGGCGCTGTTTGATTATGATCCTGTACGGGATTCACCGAATGTTGACAGTGAAGTGGAGCTAATGTTTAAGACGGGAGAAATTATTTATGTGTTTGGAGATATAGATGATGATGGCTTCTTTCAAGGTGAACTTCGTGGTATTCGAGGACTGGTGCCTTCCAATTTCTTAGAACTTGTTAAAGATGACACCTATGACAGCAAGGAGAACATTAACGTAAGTCAACTGCTCATTAGTCCAACAAAAGGATCTGCGTCGACTTCACAGGAACAAGAAGCCATGATCCTCTCCCCTGACCTGCCAAATGGCGCACTCAGAGAACAAGAAGAACAACAATTACTACAAAAGAAGAAAAAGGGAATCTTCTCTAAAGGAAAGAGAATATTTAAGAAAGCTTTTAGATAA

Transcript

Ppa0G005290

Protein

Ppa0G005290

MASKAPVTKDINTLGEEKRTHSQQGGLGTLWSNQDEMKRYVSKLKSELDEQKSRVKRVHRDKAEEMKRLQENLDNERQKAVENVSKKLESDKVYELKKLRESVLKQKESELRQVLRLKDEEMRALKQELQDSRNTTRILELENKRNLNERQRGDTEEQDRRLRNEVAALRNDKRRLEESLRIKTDADFEKAEMIRRMKHEHDTELHRLTRESKRESLKEFRHLRAVSREIEAKNSQLAAKETEMRRLEQEKNSLGDELNLQRKKIPSDGNLSKSNSFNLQQRPKDLSASSDFENATEDRIKKLKMRNTELVAIARKLEGKAKRLQEEKDIFRGNFNLIELNPEVGNLRKAFAHQRAKDLAEHAKLLMNKDHEIDNLKKELAQLNNCSSSVTENGNVDDLEKIVQQTAKEHLLLEKQLSSKGEVLAEENKEISAKNLKLSNDNEILQAELRKLQDVETKHFKTVFEMNQIREEHMKLQHASSEKDKRIYKLELEKQTCVAKNNALQKKNSELSHKVEKLGKLENECSTLKEKLETLKNEYDMLRAENSKLRAQVESLSTLKKEVERLQEDNLGLQKEKEASVFELEEREREISSLHKAQSEAQKKYDEQVNERDEMIRRLKEQPAQTLEKTNVEFHNPSLIGTPVLSSTPKTTTFTQTSRPSSPILSPINDYRSEDLQKAEELNNPSEADSQVLDSLHVPDYYATSSSASFDLEKAGTRIEQLAASDSDETDFESSRRATIDSPSASSDISDYSEEDSDRSSSENASYSADVSHTSDVEEPQRTTKEDSKKEVKNDEDEEDVFIGNQMHESPDVEEKLSIFIAKYSYDPMLYSPNENPESELAFQAGDYLYVYGDTDEDGFFVGELMNGERGLVPSNFVERIADDSSDEEITLKDEDGKKKVIRPKAFSERRHEMFRTSLDHMLSDQLEDIRESEEEDFGNSSVSEDELGGRKRENRKTEADQNFSDSDGLDSMDSDPPPPRVPSPTKLSLDRQFTKSALISWQGASLPNEEIQGYNIYIDGRLKTQVKGSKKTNALLEDIDPNETYRLSVRTKSVNGKESPDYAATMVCGTDAKLLPYNLQILHVTQTSAEVDWVPANSCYGHEVFLDDSLLQCVKPAVSSYTLCDLSPSTLYRLPEPPVDLRLEQQTAEKIILTWLPVTISPTGYSNGFKVSGYKVYVNGVYCTETDSASLDSVNISTERLRNLGKRHDFTRMRFVVRTQSILGESTDSNVVEVSNEGGGSVTESQLSVEQQDSNETEVRTTSDSSAVAEASCATENDIHKQIESSSQQISDNVLSDLERKTGTSDGLPNSIDLETRPDESHSLVDLSPSVATGNTGDDDDNNRTNEQKREDFMTATHDLRSDDDRGKPVEPYSAEYAVGQHKEAHSAEESETSSTTDNIEEHSETKEHYMGSGDTASAFADELPSAGRRKPNVIHYDIDDDTETESCTAESKTETEEIATNENKDGSEVEQVKDSTAIPKEDQGLPNMTVSDRQQSESETDTDYEELLSVIDEVDEENLTETSNNSLTENPDEDISSNEDPTISSGKLNSVVSNSSKISARSGSKTRTLSSEDEGFRTDDDVLDLLDDDNDVARDKPWEGEGSTGREEPWEGEGSTGREEPWEGEGSTGREEPWEGEGSTGREEPWEGEGSTGREEPWEGEGSTGREEPWEGEGSTGREEPWEGEGSTGREEPWEGERSTGREEPWEGEGSTGREEPWEGERSTVREEPWEGEGSTGREEDTHNIVPAMINGEHTDNAVLNNTSAETTEVGDSANNRTQTKLNDENQEMDSSDTLSDKVETNGNATGDDSNGDTSDSSYPTRTSLNSDSSLSSSDHDAPPPPDRALDTIIKTLSLPGNRELGSGESDPNNDNAYLGSDSEKASLLLSESGRSEPEGGDNLTELVRFFVALYNYDPLSMSPNADGADEELPFTEGDLIKVFGDKDDDGFFWGECKTRQGFVPSNMISEVSIDEAEDLFEETSNNLPSFEAINKFPHKQINGHSELDVDVDSEDTDVKDRLSFWEHLGNGELEPRKMRALFDYDPVRDSPNVDSEVELMFKTGEIIYVFGDIDDDGFFQGELRGIRGLVPSNFLELVKDDTYDSKENINVSQLLISPTKGSASTSQEQEAMILSPDLPNGALREQEEQQLLQKKKKGIFSKGKRIFKKAFR

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JIR0	Peripheral-type benzodiazepine receptor-associated protein 1 OS=Rattus norvegicus OX=10116 GN=Tspoap1 PE=1 SV=2
Q80U40	RIMS-binding protein 2 OS=Mus musculus OX=10090 GN=Rimbp2 PE=1 SV=3
O15034	RIMS-binding protein 2 OS=Homo sapiens OX=9606 GN=RIMBP2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002289 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02183 all species →	HALZ	Homeobox associated leucine zipper	Coiled-coil	Interproscan
PF07653 all species →	SH3_2	Variant SH3 domain	Domain	Interproscan
PF14604 all species →	SH3_9	Variant SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003106 all species →	Domain	Leucine zipper, homeobox-associated	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR040325 all species →	Family	RIMS-binding protein 1/2/3	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR035753 all species →	Domain	RIMS-binding protein, second SH3 domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14234 all species →	RIM BINDING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007274 all species →	Biological Process	neuromuscular synaptic transmission	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19922	TSPOAP1, BZRAP1, RIMBP1; peripheral-type benzodiazepine receptor-associated protein 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.