Gene detail

Detailed information of Ppa0G005990 in Paragorgia papillata

Genomic Location: Contig00002:1216563...1218293
NR annotation: CAB4002009.1, 39S ribosomal L18, mitochondrial [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CQL5	Large ribosomal subunit protein uL18m OS=Mus musculus OX=10090 GN=Mrpl18 PE=1 SV=1
Q9H0U6	Large ribosomal subunit protein uL18m OS=Homo sapiens OX=9606 GN=MRPL18 PE=1 SV=1
Q3ZBR7	Large ribosomal subunit protein uL18m OS=Bos taurus OX=9913 GN=MRPL18 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007787 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00861 all species →	Ribosomal_L18p	Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005484 all species →	Family	Large ribosomal subunit protein uL18	Interproscan
IPR036967 all species →	Homologous_superfamily	Small ribosomal subunit protein uS11 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12899 all species →	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0008097 all species →	Molecular Function	5S rRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02881	RP-L18, MRPL18, rplR; large subunit ribosomal protein L18	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.