Gene detail

Detailed information of Ppa0G006090 in Paragorgia papillata

Genomic Location: Contig00002:1270503...1273762
NR annotation: CAB3985530.1, caspase-3-like [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8MJU1	Caspase-3 OS=Felis catus OX=9685 GN=CASP3 PE=2 SV=1
P55213	Caspase-3 OS=Rattus norvegicus OX=10116 GN=Casp3 PE=2 SV=2
P70677	Caspase-3 OS=Mus musculus OX=10090 GN=Casp3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000405 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00656 all species →	Peptidase_C14	Caspase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015917 all species →	Domain	Peptidase C14A, caspase catalytic domain	Interproscan
IPR029030 all species →	Homologous_superfamily	Caspase-like domain superfamily	Interproscan
IPR002138 all species →	Domain	Peptidase C14, caspase non-catalytic subunit p10	Interproscan
IPR001309 all species →	Domain	Peptidase C14, p20 domain	Interproscan
IPR011600 all species →	Domain	Peptidase C14, caspase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10454 all species →	CASPASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008234 all species →	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0004197 all species →	Molecular Function	cysteine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006915 all species →	Biological Process	apoptotic process	Interproscan
GO:0043525 all species →	Biological Process	positive regulation of neuron apoptotic process	Interproscan
GO:0097153 all species →	Molecular Function	obsolete cysteine-type endopeptidase activity involved in apoptotic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02187	CASP3; caspase 3	EC:3.4.22.56	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.