Gene detail

Detailed information of Ppa0G006600 in Paragorgia papillata

Genomic Location: Contig00002:1990764...1992747
NR annotation: CAB3996173.1, Hypothetical predicted protein [Paramuricea clavata]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CQK1	Zinc finger HIT domain-containing protein 3 OS=Mus musculus OX=10090 GN=Znhit3 PE=1 SV=1
Q6UIM1	Zinc finger HIT domain-containing protein 3 (Fragment) OS=Macaca mulatta OX=9544 GN=ZNHIT3 PE=2 SV=1
Q15649	Zinc finger HIT domain-containing protein 3 OS=Homo sapiens OX=9606 GN=ZNHIT3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008184 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21373 all species →	ZNHIT3_C	Zinc finger HIT domain-containing protein 3, C-terminal domain	Domain	Interproscan
PF04438 all species →	zf-HIT	HIT zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051639 all species →	Family	Box C/D snoRNA	Interproscan
IPR048371 all species →	Domain	Zinc finger HIT domain-containing protein 3, C-terminal domain	Interproscan
IPR007529 all species →	Domain	Zinc finger, HIT-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13483 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000463 all species →	Biological Process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0000492 all species →	Biological Process	box C/D snoRNP assembly	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0048254 all species →	Biological Process	snoRNA localization	Interproscan
GO:0070761 all species →	Cellular Component	pre-snoRNP complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23309	ZNHIT3; zinc finger HIT domain-containing protein 3	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.