Gene detail

Detailed information of Ppa0G009480 in Paragorgia papillata

Genomic Location: Contig00003:2636559...2709376
NR annotation: CAB3983424.1, CWF19 2, partial [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G009480

ATGGCGGATTTGGTGAAGTTTGTATCCAAGTCAGAACTCGATGCAAAGAAAGCAAAACTACGCGAAGCAAGAGAAACAGTTCTTCGTAAAGCTAAAGACGATTACGAAAAGAAAGAACGTGAATTGGAAGCGAAGAGACAGAGAGGGGAAGATGTTTGGATGCTACCATCATTGAGTAAACGACTGTCTGGCAGTAGCAGTGAAGACGAGAAGAAACATAAAAGCGGCAAGAAAAAGAAGAAAAAGAAGAAGAAACACAAAGTCAATACGTTTCTTTACGGACCGCTAAGTTTTTGCGGGAAATTTCTGAAAGAAGATGAATGGGTGGAAAAGGATGCTGTGTCTTCAGCTAATCTAGCTGGTGAAAGTAAAATAAGTAATCAGGCAGCCCCTCCTCAGATTGGTCAACATCCTAGAGAGTTGAATCCATATTGGAAACAAGGTGGGGCTGGTCTCCCATCCGCTAACACAAGTAACAAAGGTTCTAATTCTGGCAACAGAGCGTGGTTTAAGAGGGCTTACGAACGAGCCAAGCAGCAAGCAGAAGATGAAGGAAGATCGCTGGAAGATGTTGCTGCCGAAAGATGGGGGTCCTTGGAAAAATTAAAAGCACTGGCAAATGGCGACGAAGAGGAAAGTTATCCACAATACTTTAGCAGTTGTGTCATTTCTGACTTCAGAAGTACCGTGAGAGAAAGAAATAGAGGAAGGGACGAGAGCCGAGGTGGATATAAAGAGTCGAAACATGACAGTGCTAAACGACGAGGATATGAAAGGGATAACAAAGGAAGATCTGAAAGTTCGAGCCGTAGCAGAGATAGTTATGGAAGATGGAGAAAAAGGCAAGATGAAGCTCAAACGACTACGAAGGAGGCAGTAGAACCCATACCATCGAAACAAAATGAAGACATTGCAGGAACTGTCCATGAGAGCTCAGATTCTACGTCGTCTTCAGATGGGAATGAGAAGAACACAAAAGATGATGATGATGATGATATTGAAGAAAAGAAGTTGATGTCAAAAAGAGTCACGGAGGCTGACCTTAATGCTCTTGGGGCAAAACGTTTGAAAGCAGAGTTGATGGGAAATGAGGAACTTGCTGAAGAACTTCATATCAAACTCGATAAGTTAAGAAAGATCAAAGAAAAACAAGAAAAATCTGGCGGGATGGATAAAAAGAATGAGGACGACGAAAATGTGGTAGTTCTTACGAGGACGGATCGTGCGGGCAATGTTGTGCCTGTGGAAAACCGTTCACGAAGGGAGGATAAAGGGAAGAGGCGGAAGCGGCATAAGAATGTTTCTACTCATGATGAAGATGGAAAGCGCAGTCGCTATTTTTGTGACGATGACGATCATGATCTTAAGTCGTTGGTGGCAAGAGAAAGGATGAGTACTGCTGAAGATCAAAATGCCACTTATGCCAGACTTGCTCATAAGTTAGGAGGGCAGTTTGATTTGGATGATAAATTTGAGTCTGCCGCGGCGAGCAAGTACACCCCTGAAGAACTTGAAGAGAAGGCTAGACAAAAGGCCATAAGAGAACATCAGCGACTTGCCGCACAAATGGAAAATTGCAAGTATTGCTTGGATAGCGCTGACTTGGCAAAACATCTTATTATCGCTATTGGGTTGAAGGTTTATCTAGCGCTTCCCTCGAACCAATCATTGTGCGACGGACATTGTTTGTTAATCCCCATAATGCACCACACGGCGGGAACCATGGTGGATGAAGACGTGTGGAGTGAGATACAGATCTTTAAGAAAGGCCTTACAAAGCTATTTGATGAAATGGGGAAAGATGTTGTGTTTATGGAAATGAATAGAAATCTCAATAAAAAGCGTCATATGATGATTGAATGCGTGCCAGTTGAGAAAGAAATTGGCGAATTGGCGCCTATATACTTCAAGAAAGCAATACTGGAGTCCGATGCGGAATGGGCGCAAAACAAGAAACTTATCGACACGAGAAAGAAAAACTTACGTTCATCGGTACCAAAAGGCCTTCCTTATTTCAGTGTCGAGTTCGGTCTTGATGGAGGTTTTGCTCACGTGATCGAGAATGAAGACTTAGTTCCAGCGTACTTTGGCAAGGAAATTGTCGGCGGCATGTTGGAGTTGGAACCTTTTATCTGGAAAAAGCCCCGGAAAGAGAACTTCCAAGTACAAAAAAAGAAAGTTCTGCAGTTCGCTGATTGGTGGAAACCTTTTGACTGGACTCAACGAATACCGAAGAAGTAG

Transcript

Ppa0G009480

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2TBE0	CWF19-like protein 2 OS=Homo sapiens OX=9606 GN=CWF19L2 PE=1 SV=4
Q8BG79	CWF19-like protein 2 OS=Mus musculus OX=10090 GN=Cwf19l2 PE=1 SV=1
Q28C44	CWF19-like protein 2 OS=Xenopus tropicalis OX=8364 GN=cwf19l2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004123 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04677 all species →	CwfJ_C_1	Protein similar to CwfJ C-terminus 1	Family	Interproscan
PF04676 all species →	CwfJ_C_2	Protein similar to CwfJ C-terminus 2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040194 all species →	Family	Cwf19-like protein	Interproscan
IPR006768 all species →	Domain	Cwf19-like, C-terminal domain-1	Interproscan
IPR006767 all species →	Domain	Cwf19-like protein, C-terminal domain-2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12072 all species →	CWF19, CELL CYCLE CONTROL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0071014 all species →	Cellular Component	post-mRNA release spliceosomal complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24940	CWF19L2; CWF19-like protein 2	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.