Gene detail

Detailed information of Ppa0G011330 in Paragorgia papillata

Genomic Location: Contig00004:1626818...1630799
NR annotation: XP_046849309.1, 39S ribosomal protein L11, mitochondrial-like isoform X1 [Xenia sp. Carnegie-2017]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2RQU9	Large ribosomal subunit protein uL11 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1) OX=269796 GN=rplK PE=3 SV=1
A9H3T4	Large ribosomal subunit protein uL11 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / CCUG 37298 / CIP 103539 / LMG 7603 / PAl5) OX=272568 GN=rplK PE=3 SV=1
Q2YDI0	Large ribosomal subunit protein uL11m OS=Bos taurus OX=9913 GN=MRPL11 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004091 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03946 all species →	Ribosomal_L11_N	Ribosomal protein L11, N-terminal domain	Domain	Interproscan
PF00298 all species →	Ribosomal_L11	Ribosomal protein L11, RNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000911 all species →	Family	Ribosomal protein uL11	Interproscan
IPR036769 all species →	Homologous_superfamily	Large ribosomal subunit protein uL11, C-terminal domain superfamily	Interproscan
IPR036796 all species →	Homologous_superfamily	Large ribosomal subunit protein uL11, N-terminal domain superfamily	Interproscan
IPR020784 all species →	Domain	Large ribosomal subunit protein uL11, N-terminal	Interproscan
IPR020783 all species →	Domain	Large ribosomal subunit protein uL11, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11661 all species →	60S RIBOSOMAL PROTEIN L12	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005762 all species →	Cellular Component	mitochondrial large ribosomal subunit	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0015934 all species →	Cellular Component	large ribosomal subunit	Interproscan
GO:0070180 all species →	Molecular Function	large ribosomal subunit rRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G011330.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.