Gene detail

Detailed information of Ppa0G018630 in Paragorgia papillata

Genomic Location: Contig00012:1388130...1463185
NR annotation: CAB3994720.1, Glycogen debranching enzyme, partial [Paramuricea clavata]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G018630

ATGGTGGTCAATAGTGGTGTGAGAATCCTTGAACTGCAGAGTGGGGTTGATTTGGAAAGACAGTTTTTTCGCTTGCAGAAAGGTTTGAAACTAAAGTTTGTATTGAGTCCATTGCTCCAGCCTTATCATGGAAAATTATTCTGCAACCACCCGGATAAAGGCAAAGCTTTCAAGCGGACAAGGTATCAAGAACTTAAATGGCACATGTCGTCAAAATGCAAATGTGATGATGGAGATCGTTATGCTGAGTTAGAAACACACATTCCAGGATCCTTTCATTTTTACTTTCAATATTCTGACGATGAAGGAAAGGAGAATAAACAAACCTCGGGATACTTCGTAGTTGATCCAACATTGACCATGGATGGTGGAGAACATTTGCCGTTAGACTGCATTGCTTTGCAAACGTACTTGGCGAAATGTCTAGGACCACTGTCTGAGTGGAATGATCGACTTCGTGTAGCACATGAAGGTGGTTACAACATGATTCACTTGACACCCGTGCAAGAACTCGGTGGATCACAGTCTGCATATTCACTTTACGATCAACTGAAGATGAACAGTTCATTTAACGAACAAAATATGAAGAAAAAGTATGACTTTGACGATCTAAAAAATCTCGTTGAGGGGATCCATAAAGAATGGAAAATGTTTTTCATTTGTGACATAGTTCTCAATCACACTGCTAATTGCACGCCGTGGTTAAAAGACCATCCCGAGTCAGCTTACAACCTTGTGAATTCTCCCCACCTGAAGCCAGCGTATGTGGTAGATGAGGCCATATGGAAATTCTCTCGCGAAATTGCCCGAGGTGATTATGACAGTCAAGGTATTCCGATCTATCTTATTCGTGAAGAACAACTCGTCGCCGTGCACAGAATTTTAAGTGAACAAATATTACCTGCCTTAAATTTATGGGAGTTTTTTGGAATTGATGTGAATAAAGTGGTTGAAGATTTCAAGAAGGCTTTAATACTGAAAATAAATGCTTTAAAAAATTCACAGACTGCGCTGCATGCGACAAATGTGTCACCTGAAGTTATGATTGTGCAAGATCCCGAGTATAAACGGTTAGGAAACACTATTGATCTAAAAACTTCTGTCAACTGGTACTTTTCAACGAGGGACTCCTCTGTCAATGAAACTGAATGGATTAACCATTGTTGTTCCTCACTGCGTGTGATTCTGGAGAGTTTAAACAACAAGATTATCCACGAAGATATTCCTGACCACATTCGAACTATAACGTACAATACAGTATCGAATCTACGTTACGAACGACTGGATGAGAAAGGACCTCGATTTGGCTATTTCACTAAAGAACACCCACTTGTTTCAAGGAATTTCATCGATTTAACCGAGAGTGATGACAACTGTGAGGACTTCAAGGAATCTATAATGTATACTGATCATGCGAAGTATATGGTAGCACACCCTGGTTGGATCATGGGCGGGAACGCTCTAGATGATTTTGCTGCGCCTGGATCATTAGCGTACTTCAGAAGAGAGGTGATCATCTGGGGAGACAGTGTTAAACTACGCTTTGGAGAAAAACCTGAGGACGCGCCTTTCTTATGGGGTCGCATGATGGAATATGTCAAACTAACTGCTAGTATTTTTCATGGTATTCGTTTGGATAACTGTCATAGCACACCTATTCACGTTGCTGAGTACTTTATAGATGGAGCTCGTGAGGTTCGTCCTGATCTTTACGTCATTGCTGAACTTTTCACTGAATCGGAGAATACAGATAATGTTTTTGTCAATCGACTTGGACTAACGTCACTTATTCGAGAGGCCATGTCTGCTCACGACTCTCACGAAGAAGGTCGTTTGGTTTATCGTTATGGCGGTGAACCAGTTGGAGCGTTCTTTCATTTGTCTGGAAAACCAATGGTGAATGGTGTGGCACATGCTTTGTACATGGACGTCACTCACGACAATCCCAATCCAACTGAGGTTCGCTCGGTTTATGACTCTTTTCCCACTGCAGCTTTGGTAAATATGGCGTGTTGTGCCACTGGTAGTACTCGTGGAAATGATGAGTTTGTGCCACATCATGTTAACGTCGTCACTGATAACAGACGATACTTATCTTGGAAAAGTGATGTGAAAAAGCTATCTCTGTCGGTTTCCTATCTACCACTTCACTCGGGAATGATTTCAGCCAGAGGAGCCCTGAACAAACTTCATCGAATGTTAGCAAAAGAAGGCTATAATCAGGTTTATGTTGACCAGATGAGTTCCGACATTGTAGCTGTGACTCGACATTGTCCTGAAAATCACCAAACTGTTGTTCTTGTGGCTCATACATCATTTTCTAAACCCGAAGATCATATGATTCCTACCACGTCGAAAAAAAGCATTCAGACCTGTGGAATCAAACCTTTACATGTTGAAGGAAAGATTGATGAAATCATATTGGAAGGTCAAACTCTCATGAAAACTGATTCGAAAGAATTTTTGAAAAGTACTGATTTTATTAATGGACTTGAATCCCATGTTGTTGAAATACAAGAACACATTGGCCTAGAGCAGTCACAGTTTGTAAGAGTGGAACGTAAGGATGATTGTCAGGATGTCTTTTTTGAATCTTTTCCACCTGGAAGTGTGATTGCTTTTAAAATCTCTTTATTCCCACATGTAAAACAAGCAGTGGATTCTGTCAGAACTGCCGTCACTGATTTTAGCAATAGTGAAAGTGACGCAAGCGAAAATAACGCCGTGTTTAAATCACTAAACCTCGCTGATATCAATCGTATCTTATATCGTTGTGATGCCGAGGAAAGAGCAGATGGGCATGGTGGCGGTACTTATGATGTACCAAGTTTTGGACCGTTTGTTTATTGTGGTATTCAAGGTTTTATGTCTACCATGTCTTCAATTCGTGCCAATAACGATCTTGGTCATCCTATCTGTCATAACTTAAGAGAAGGAAACTGGCTGATGGATTATACTGCCAAGCGCTTAATACCATTTGAAAGGACAAAAAAGTTTGCATCCTGGCTTCAATCTATTATTGCTCACATTTCCAAACTGCCCCGCTACATGATTCCTGGTTATTTTGATGTGTTTATTACGGCAGTCTATTTGCGTCTTATTGAGAGAGCTTGGGAACAGATGAATAGTTTTATTCAAAACGGTTCGTCGTTTTTGAAATCCTTAGCCATGGGCTCTGTACAGCTAGTGGGATCAACTATTTCTGCTCCATTACCAGGACTTTCTCCCAATCTTGTTCCGCTGGATGCCAAATCAACTGGTGACTCTCGTCTCCTTACCATTGCCGCTGGCCTCACTCATTTCTCTGTCGGTCTTTGGAGGAGCTGGGGACGAGATACATTTATTTCATTGAGGGGACTGTTGTTGGTAACTGGGCGTTTTCAAGAGGCCAGAAACTTAATTCTTGCATATGCTGGTTGTATTCGCCATGGTTTGATTCCGAACTTGTTAAATGGCGGTACTGGTGCCAGATATAATTGCCGTGATGCCACATGGTGGTGGCTTCAGTCTATCCAAGATTACTGCCATATGGCAGCAAATGGAACTGATATTCTCAAGTGTCCTGTCACTAGAATGTATCCTAAAGATGATTCCAACCCGTTACCTGCAGGAGAAGTCGAGCAACCTTTACACGACGTTATGCAGGAAGTATTGCAGCGCCATTTTAATGGTATTAAATTTCGAGAACGCAATGCTGGTCCAGGTCTAGACAGAAATTCTCGAGATGAAGCGTTCAACGTCGAAGTCGGAGTTGACCGTGAAACGGGATTTGTGTTTGGAGGAAACGAGTGGAATAACGGGACATGGATGGATAAAGTTGGTGAGTCCACTAGTGCTGGAAATGCTGGGGTGCCAGCTAGTCCAAGAGATGGCAGTGCCGTGGAAATCGTTGGTCTTTCTAAATCTGCAGTACGGTGGCTTGCAGAAATGTCAAAAAAGAAAATATTTCCGTTTAAAGGCGTGACAGCTGACAAAAGTTGGTCGTATGCTGAATGGAATGATAAAATACAAAAGGCATTCGAAGAAAAATTTTGGATAGGCGAACAACCAGATCCAAGTGTGGAAGGAGACGAAACCGGGATTGTAAACAAGAGAGGCATTTATAAAGATTGCTATAAAGCAACACATCGTTTTACCAATTATCAACTCAGACCTAATTTCCCGGTCGCAATGGTGGTCGCGCCGGAAATGTTTAATCCAAAACATGCATGGACAGCGCTGGAAATGATAGAAAAACATCTTCTTGGTCCTCTAGGTGTTGCCACCTTAGATCCAGCAGATTGGGCATACGATGGTGTCTATGATAACTCTCAGGATTCTAATGTGTATAAGAACTCTCGTGGCTTTAATTATCACCAAGGACCGGAATGGCTTTGGGTTCTCGGTCCTTACCTTCGTGCTCGGCTACATTTCTCGAAAATTATTGGCGGTAGCAGAAAGTTAGCTGAAACATCACATGAAGTGAGGAAACATCTTTCCAATCATTACCAATATATTCTCAACACTCCCTGGCATGGTCTTCCTGAATTGACCAACGTGAAAGGCACTGTGTGCAAAGATAGCTGCGACGTACAAGCGTGGTCAATGGCTTGTCTTTTAGATGTTTTTTATGACATGGAAAATCTGATGTAG

Transcript

Ppa0G018630

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P35573	Glycogen debranching enzyme OS=Homo sapiens OX=9606 GN=AGL PE=1 SV=3
Q2PQH8	Glycogen debranching enzyme OS=Canis lupus familiaris OX=9615 GN=AGL PE=2 SV=1
A8BQB4	Glycogen debranching enzyme OS=Equus caballus OX=9796 GN=AGL PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003738 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14701 all species →	hDGE_amylase	Glycogen debranching enzyme, glucanotransferase domain	Domain	Interproscan
PF14702 all species →	hGDE_central	Central domain of human glycogen debranching enzyme	Domain	Interproscan
PF06202 all species →	GDE_C	Amylo-alpha-1,6-glucosidase	Repeat	Interproscan
PF14699 all species →	hGDE_N	N-terminal domain from the human glycogen debranching enzyme	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032792 all species →	Domain	Glycogen debranching enzyme, glucanotransferase domain	Interproscan
IPR008928 all species →	Homologous_superfamily	Six-hairpin glycosidase superfamily	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR032788 all species →	Domain	Glycogen debranching enzyme, central domain	Interproscan
IPR032790 all species →	Domain	Glycogen debranching enzyme, C-terminal	Interproscan
IPR029436 all species →	Domain	Eukaryotic glycogen debranching enzyme, N-terminal domain	Interproscan
IPR012341 all species →	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan
IPR006421 all species →	Family	Glycogen debranching enzyme, metazoa	Interproscan
IPR010401 all species →	Family	Glycogen debranching enzyme	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10569 all species →	GLYCOGEN DEBRANCHING ENZYME	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004134 all species →	Molecular Function	4-alpha-glucanotransferase activity	Interproscan
GO:0004135 all species →	Molecular Function	amylo-alpha-1,6-glucosidase activity	Interproscan
GO:0005978 all species →	Biological Process	glycogen biosynthetic process	Interproscan
GO:0005980 all species →	Biological Process	glycogen catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01196	AGL; glycogen debranching enzyme	EC:2.4.1.25 EC:3.2.1.33	Starch and sucrose metabolism	ko00500	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.