Gene detail

Detailed information of Ppa0G020500 in Paragorgia papillata

Genomic Location: Contig00012:4725628...4740993
NR annotation: XP_028404432.1, THUMP domain-containing protein 1-like [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NXG2	THUMP domain-containing protein 1 OS=Homo sapiens OX=9606 GN=THUMPD1 PE=1 SV=2
Q99J36	THUMP domain-containing protein 1 OS=Mus musculus OX=10090 GN=Thumpd1 PE=1 SV=1
Q24K03	THUMP domain-containing protein 1 OS=Bos taurus OX=9913 GN=THUMPD1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007628 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02926 all species →	THUMP	THUMP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040183 all species →	Family	THUMP domain-containing protein 1-like	Interproscan
IPR004114 all species →	Domain	THUMP domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13452 all species →	THUMP DOMAIN CONTAINING PROTEIN 1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006400 all species →	Biological Process	tRNA modification	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06963	TAN1, THUMPD1; tRNA acetyltransferase TAN1	-	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.