Gene detail

Detailed information of Ppa0G020620 in Paragorgia papillata

Genomic Location: Contig00012:5020452...5051724
NR annotation: XP_028404629.1, splicing regulatory glutamine/lysine-rich protein 1-like isoform X2 [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Ppa0G020620

ATGACTACTGGTGAAATTCAACGTGAAGGAACAAGAGTTATTCAAGTTACCAATGTCGCTAAAACGGCCACTCATGAACAGTTGAAAACATTTTTTGAATTTCTTGGAGTGATCGAGGAGCTAAAAGTGTTCCCCAGCCAGGATCTTACATCATATGGTACAAAAGTTTGTTATGTAAAGTATGAAGATGAATCTAGCGTGCATCTAGCACAGCACTTAACAAATACAGTATTTATTGACCAAGCACTCATTGTTGTGCCACTTGGAGATGGAATTATTCCTGAAGAACACCAAGCCTTACTGATAGTTACATCAGCCTCTACTGTGGTGGACAGTTATGGTGGTGGATTATTGTATCAGGGTATACCTGGTATTGTCCAAACTGTCATTGGATCAGTTATGCCAGTTGTACGAATGCAACTGACATGCCCACAACCCCCTCCATTGCCAGACGTTGAACCAGCAAAGCTTGATGAAATCCGGCGGACTGTTCATATTAGGCACTTACCAAAAGATATTACCGCAGAACAATTGATGTCATTTTTTTCGGCCTGTGGCGATATTCGATATGTTCGAATTGTTGGAGATGAAGAGGAATCGGTTACTAGGTATGCATTTATCGAATTCAATGAAACTTGTTGTGTTGGGAGAGCCCTTCAGTACAACGGAGCTCTATTTGGTGGCGTGCCATTGAAGATTGATTACTCTAAACATGCCATAGTGAAGCCGGAAAAAGAGATTGCACGCACTAAAACCGTGCTGGACAAAACTATGAAAAAAGTTACTGAAGCCTCAAAACTGGTCAGCGAGGAGCTTGATGACGATAATACGAAGTCTCGGAAAAGTTCACGAAGTCGTTCACCATCTCGCAGTAGGCGATCTCGTTCGCAATCACCTTCAAGATCAAGAAGACGAAGATCACATTCAAGATCAAGCCCATGGTACAAATGGGTTGTCAAAAATATTGTCCCCGAGCCCGGAGATCGCTATAGTCGTCCAGCACGTCGACGCTCGCCTTCACGGGAAAGATACAGAGGAGCGCGACGAGTGTCCAGAAGCCGTAGTCGATCACGTTCGCCCTCGCCCTACAGACGACGATCGCACAGATCTTCATCAAGATCTCGCCTTGCGCGTGGATCTAACAATCGAAGTCACAAGTCCAAGAGCCCAAGTCCAAGCAGAGATCGTAAACGTCGTCGTTCTACCTCCAGAGGTCGGTCAAAAGACAGAGCGAGGCGTCGGTCGAAGGATCGCTCACGTGATCGGTCGCGTGATCGGGGAAAGACCAAGTCGAAAGATAGTTCGAGAAAGAAAAGCGAAAAGAAGGAAGAGCCGAAGTCACCGGATAAGAAAAAGGAAGATGAAGAAGAAAAACGTAGTGACAAGGAGGAAGAGGAAAAGGGAGAGTCTAAAGGGAAAGAAATGTCGAAAAAGAAAGCAGAAAAACCGAAAGAGAAGTCTCGATCAAGGTCTCGTTCAAAAAGTCGACAACGAGAGAAGAAAAGGTCCCGTGATAAGTCTCACAGTCGATCTCCATCTAGATCCCCAAGACGATCGTCTTTAAAGCACAAGAAAAAGAAAGAAAGACGAGATAAAGGTTCCACTCGACGCGGTAGTGATGACGAATACGAAGGTAAGAAGCATGCGAGAGAAAGTGGTGAGGACGACCAGGAAGAACGGCCAAAACAAAATCGTAGCGACGAATCGGACGACGATCGCAAAAAAACTCGCCGACGACGAAGTGACGACGGTGATTCCGAACCTGAGGATAGCAAGAAGAAGAAGCGCCATTATAAGAAAAAGCCGATATCCGCTGATCACTACGATAGCGGTAGCGATTAAGAAATGCTGGATTAAAACAGTTAGAAAATAACTTTTACACTATATTCACCATTTTCTATAAAAAATGTATAATATTCTTTGTTTGTGAGTGAACCAAATGATTTTTGAGAATTAAAACCTCGCATCCAAGTGTTTTGACGATATGTTTTATGGAATTTGTTTTCTTTTGGTGTTGCAATAGGTGTTTTTTAGGGGCTGTTCATATGAGGCGAGCTAGCCCGGTTACTG

Protein

Uniprot

Uniprot term	Description
O01159	Probable splicing factor, arginine/serine-rich 7 OS=Caenorhabditis elegans OX=6239 GN=rsp-7 PE=3 SV=3
Q8BZX4	Splicing regulatory glutamine/lysine-rich protein 1 OS=Mus musculus OX=10090 GN=Srek1 PE=2 SV=1
Q9JKL7	Splicing regulatory glutamine/lysine-rich protein 1 OS=Rattus norvegicus OX=10116 GN=Srek1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32343	SERINE/ARGININE-RICH SPLICING FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13165	SREK1, SFRS12; splicing regulatory glutamine/lysine-rich protein 1	-	Spliceosome	ko03041	deepkoala