Detailed information of Ppa0G022760 in Paragorgia papillata

Genomic Location: Contig00014:25851...60562
NR annotation: CAB3993967.1, DNA polymerase theta-like [Paramuricea clavata]
Species abbreviation PPAPI · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O75417DNA polymerase theta OS=Homo sapiens OX=9606 GN=POLQ PE=1 SV=2
Q8CGS6DNA polymerase theta OS=Mus musculus OX=10090 GN=Polq PE=1 SV=2
O18475DNA polymerase theta OS=Drosophila melanogaster OX=7227 GN=PolQ PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004235 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04739
all species →
AMPKBI5'-AMP-activated protein kinase beta subunit, interaction domainFamilyInterproscan
PF16561
all species →
AMPK1_CBMGlycogen recognition site of AMP-activated protein kinaseFamilyInterproscan
PF20470
all species →
HTH_61Helix-turn-helix domainDomainInterproscan
PF21099
all species →
POLQ_helicalDNA_pol_Q helicase like region helical domainDomainInterproscan
PF00270
all species →
DEADDEAD/DEAH box helicaseDomainInterproscan
PF00476
all species →
DNA_pol_ADNA polymerase family AFamilyInterproscan
PF00271
all species →
Helicase_CHelicase conserved C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006828
all species →
DomainAssociation with the SNF1 complex (ASC) domainInterproscan
IPR014001
all species →
DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR002298
all species →
FamilyDNA polymerase AInterproscan
IPR032640
all species →
DomainAMP-activated protein kinase, glycogen-binding domainInterproscan
IPR013783
all species →
Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR046931
all species →
DomainDNA polymerase theta-like, helix-turn-helix domainInterproscan
IPR043502
all species →
Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR001098
all species →
DomainDNA-directed DNA polymerase, family A, palm domainInterproscan
IPR048960
all species →
DomainPOLQ-like, helical domainInterproscan
IPR011545
all species →
DomainDEAD/DEAH box helicase domainInterproscan
IPR001650
all species →
DomainHelicase, C-terminal domain-likeInterproscan
IPR037256
all species →
Homologous_superfamilyASC domain superfamilyInterproscan
IPR014756
all species →
Homologous_superfamilyImmunoglobulin E-setInterproscan
IPR036397
all species →
Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR019760
all species →
Conserved_siteDNA-directed DNA polymerase, family A, conserved siteInterproscan
IPR012337
all species →
Homologous_superfamilyRibonuclease H-like superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10133
all species →
DNA POLYMERASE IInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0003887
all species →
Molecular FunctionDNA-directed DNA polymerase activityInterproscan
GO:0006261
all species →
Biological ProcessDNA-templated DNA replicationInterproscan
GO:0003677
all species →
Molecular FunctionDNA bindingInterproscan
GO:0006260
all species →
Biological ProcessDNA replicationInterproscan
GO:0003676
all species →
Molecular Functionnucleic acid bindingInterproscan
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan
GO:0006302
all species →
Biological Processdouble-strand break repairInterproscan
GO:0097681
all species →
Biological Processdouble-strand break repair via alternative nonhomologous end joiningInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K02349POLQ; DNA polymerase thetaEC:2.7.7.7
DNA repair and recombination proteinsko03400deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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