Gene detail

Detailed information of Ppa0G024890 in Paragorgia papillata

Genomic Location: Contig00015:457833...468410
NR annotation: XP_028401324.1, ubiquitin-fold modifier 1 [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P34661	Ubiquitin-fold modifier 1 OS=Caenorhabditis elegans OX=6239 GN=ufm-1 PE=1 SV=1
B4JVK9	Ubiquitin-fold modifier 1 OS=Drosophila grimshawi OX=7222 GN=GH22653 PE=3 SV=1
Q2KJG2	Ubiquitin-fold modifier 1 OS=Bos taurus OX=9913 GN=UFM1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009156 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03671 all species →	Ufm1	Ubiquitin fold modifier 1 protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR005375 all species →	Family	Ubiquitin-fold modifier 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15825 all species →	UBIQUITIN-FOLD MODIFIER 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0071569 all species →	Biological Process	protein ufmylation	Interproscan
GO:1990592 all species →	Biological Process	protein K69-linked ufmylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12162	UFM1; ubiquitin-fold modifier 1	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.