Gene detail

Detailed information of Ppa0G028290 in Paragorgia papillata

Genomic Location: Contig00015:5467347...5489923
NR annotation: CAB3983020.1, telomerase reverse transcriptase isoform X1 [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G028290

ATGGGGAAGAAAAGGAAGTCAACTACAAAAGATGGTTTCAATCACTCCAGGGATGTCTCTCTTTCCATTCTCGCAACTGTCTACGAGAAGCGTTGTACGTTGGCCAAGTTTTTGGAGTTAAACGGCGCCCCGAGAAATGCCTTTTGTTTCTCTGACAGCAGTCAGTGCACTACCTCTCCAGAGCTCAGAGATCTAGTCAGAACCACCATAGTGGCGTGTGGGACGGGCACTAAGGATTTGTTGGGTGTGAAGCGGAATATATCCTACAGCAAGGCCGAGTTCTCAATGCACGATATTGTTGAACGAGTTGTGGGCCAGGGCTTGGGAAATGGCAGTGCCAGTGGTCATATTTTGACACAAGGATTTCGCAAGCCACGTGTCAGTCGACCAGGTGTGACTGTCACAAAATTAGATTGCGTTTTCCCCAATACTATGGTGGCCTACGTGAAATCGCGGTTGTGGAGAGACCTTCACGAACGGATCGGAAGCGATTTAATGATGATGTTGCTCAGAGATTTCAGTGTTTTTGTAGAAACTAAATGTAGTAGTTGCTACTTCCAGGTGTCAGGGCAGCCCATTCAATCTATTGCGCCAATGGAGGATTCATCAACATCTGTCATCCCAGCATGTGATTCATGCCCTGAATCTCAAGTTACTGGCACTGCTGGGGCTGATGACAGTCCACCACCTCGGCCAAAAAAGAGACGTGTTGATTCTGTTACTCCATGTGTACAGGTTGAAAGCAGAGAGGTTGAAGGCAACCCTATAAAGAGGAAGCATGAGGAATCTTTCTTGGAGTTGGATTCTAGAAAGAAAGTAAAGTGTGAGGTTGGAAAAAAGGCCGAAAAAACATTATTAAATAGAAACCTGTTTTTTTCAACAGGTTCAGAAAAGTTTTTTGAAAAAAACCATATTCTTGAAACAGCATCAACGGGAATTAAAGGAGCCAGAGAATTAGTTAGAGATGTGTTTATGGGAACGAGTTCTGGTACTGCAATGCAGGAGAAGAAATGTAATCGCCTTCCAAAAAGACTTATCCCTTGGCAAAATGTGTTCCAGCAATTTATTGCTGGACACAAGTCTTGCAAACATAGTTCTCTATTGAAACACCACTGCCGTATTCAATCCAGAAAGTCTGAGACTCAAATAAAGGAGGTGGAGTATTCAAAGGTCTATGGTTTTTGTCGGGCTGTGTGTGTCCATGTGGTACCTGCGGAGCTGTGGGGGTCCAAGCGCAATATGGAGGCGTTTCTTTCCAATCTCTATGGGTTCATCACATTGAGGAAACGGGAGCAGTTCAGTTTGGAGGAAATAATGAAAGGAGTGAAGGTGAAGGACTGTAACTTCCTGAAAGCGAAGCAACCCAGTGGCGTTCATGTTCCGGCTTCCGTGTTTTTATCAAGAAAGAAAGCATTGTCAGATTTCTATCTGTGGTTCATGAACTCTTACATCACACCACTCTTGAAGGCTGCATTCACAATCACTGAACATGGCGTTCATCGCAACCGTGTTTTCTACTATCGCAAGAACGTCTGGCGAAACATGTCCAAGATCGTCATGAAGGAGTTAACTGGAACTTTGCTCGAGCCTGTAACTGAAGAGAAAGCTCAAAAGCTTATTGCATCTAAGGAATCTCTTGGTTATTCCCTTCTTCGTCTTCTTCCCAAGCAGAGTGGTATACGTCCTTTGGTGAATATGTCTACACGGACAAATGCTTCATCCGACGGTAAAATATCGCTTTCAATCAACCAACTGGTAGCCAATGTTTTTCACGTTCTCAACTACGAGCGAAGAACATTTCCCACGAGATTAGGAGCTGCAACGTTTGGCCTAGATGAAATTTCCTCCAAACTGAATTCGTTTGCTGCCCGCCATAGAGATTTGAAAGAAACTCAGCCTCTATATTTTGTGCGCTTGGATCTGAATCAGTGTTTTGACAACATTGATCAACAAAAACTTTTGAACGTGGTTCAAGATCTACTCAGTGAAGACGAGTACATTATTCGTCGGTATTGTGTCGTTGGTATGGGTGAAGGAGACGTCGTTAGACGACAGTACAAGAAGGTGGCGACGCCTGCCGACGATTGCAGAAATTTTCCGACGTTTGTAAATGACACTATTGCTAATTCGAACTTGAGGAATAGCGTTGTAGTGGACCAGGTGACAAATTTTACGGTGGAGAAGAAAGACGTCATGGACACCCTGAAGAAACACATCTTGTGCAATATCGTCAAAAGTGGGAAGTCTTTTTATCGGCAGAAATGCGGTATTTCTCAGGGTTCAGTACTTTCACCGATGTTATGCAATTACTATTTTGGCCATCTGGAAAACAACGCATTCAAGGAAATTATGGCAGATGAGGATTCTCTTCTTGTGCGATTGGTGGACGACTTTTTGCTCATGACTTATTCTTTGGAATACGCCAAACATTTCCTGTTCTCCATGCTCGACGGTTTCCCAGAATATAATTGTTCTGTCAAGGCCGAGAAAACTCTGGTCAACTTTGAAGCTATTACTAGTACTGGGGAACAGATAAGACGACTGCCAGAATCCACCTTAATGATGCCATGGTGCAGCTTGCTGGTCAACATGCAGACACTGGAGGTCCAGGCCGATTATTCCCGATATGAAGGGAGGGATGCCATGAACGATTCTTTGACAGTGGACAACGTATATCATCCTGGTTTAAGCATTTTCAAGAAGTTAAAGTCTGCCCTCTCGCCTAAATGTCATGCAATTTTCCTCGACCTTGGTCTGAACACGGAGCATACAGTTCTCGTTAACATGTACCAGTCGTTTTTGTACACAGCGCAGAGATTCCATGCACATGCTGCACAGTTGCCAAAAGACAAGCAAGTTCGTCACAATCCCGAGTTCTTCATGAAGGGCCTGGTGCGAGTTGTTACCAATTATTACAGTCGTGCTGTGAGGATCACTGGTGACGCTATACCTTCTGACGTCGTTTACTGTCTGTTTGCCGAAGCCGTGTTGTCCGTTTTACGTCGAAAACCTGCGCGGTATGCTGGCCTTCTTGAAATGGTTTCCAAAGAAACAAAGACATTTCCACGCAACGTCCAAGAAAAAGTGAAAGACATAACATCGGTGGCTGTTGTCACAGAATTTCTGAAGTTACGTTAG

Transcript

Ppa0G028290

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O70372	Telomerase reverse transcriptase OS=Mus musculus OX=10090 GN=Tert PE=1 SV=1
Q673L6	Telomerase reverse transcriptase OS=Rattus norvegicus OX=10116 GN=Tert PE=2 SV=1
O14746	Telomerase reverse transcriptase OS=Homo sapiens OX=9606 GN=TERT PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005425 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12009 all species →	Telomerase_RBD	Telomerase ribonucleoprotein complex - RNA binding domain	Domain	Interproscan
PF21399 all species →	TERT_C	Telomerase reverse transcriptase, C-terminal extension	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021891 all species →	Domain	Telomerase ribonucleoprotein complex - RNA-binding domain	Interproscan
IPR049139 all species →	Domain	Telomerase reverse transcriptase, C-terminal extension	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR003545 all species →	Family	Telomerase reverse transcriptase	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12066 all species →	TELOMERASE REVERSE TRANSCRIPTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003964 all species →	Molecular Function	RNA-directed DNA polymerase activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003721 all species →	Molecular Function	obsolete telomerase RNA reverse transcriptase activity	Interproscan
GO:0000333 all species →	Cellular Component	telomerase catalytic core complex	Interproscan
GO:0007004 all species →	Biological Process	telomere maintenance via telomerase	Interproscan
GO:0042162 all species →	Molecular Function	telomeric DNA binding	Interproscan
GO:0070034 all species →	Molecular Function	telomerase RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G028290.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.