Gene detail

Detailed information of Ppa0G029790 in Paragorgia papillata

Genomic Location: Contig00015:9100087...9113019
NR annotation: CAB3978271.1, NEDD4 family-interacting 1-like [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8R0W6	NEDD4 family-interacting protein 1 OS=Mus musculus OX=10090 GN=Ndfip1 PE=1 SV=1
Q6DGP4	NEDD4 family-interacting protein 1-like OS=Danio rerio OX=7955 GN=ndfip1l PE=2 SV=1
Q5U2S1	NEDD4 family-interacting protein 1 OS=Rattus norvegicus OX=10116 GN=Ndfip1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007650 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10176 all species →	DUF2370	Protein of unknown function (DUF2370)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019325 all species →	Family	NEDD4/Bsd2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13396 all species →	NEDD4 FAMILY INTERACTING PROTEIN 1/2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007034 all species →	Biological Process	vacuolar transport	Interproscan
GO:0030001 all species →	Biological Process	metal ion transport	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0031398 all species →	Biological Process	positive regulation of protein ubiquitination	Interproscan
GO:0048471 all species →	Cellular Component	perinuclear region of cytoplasm	Interproscan
GO:0050699 all species →	Molecular Function	WW domain binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25839	NDFIP; NEDD4 family-interacting protein	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.