Gene detail

Detailed information of Ppa0G030750 in Paragorgia papillata

Genomic Location: Contig00015:10926497...10966396
NR annotation: XP_028417164.1, myb-like protein L [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G030750

ATGGAAGGAGCAGAAGCTGCAAAGTTAGGTGACGTTGACAGAGATAGTTTAGTTAAGGAAATTGAGCTTATTCGACAAACTCTTGGAGTCGTATCGAACACAGTCACTGAGAAGTCAGATTCAAGGACAGAATATGATTTAGAAGACGATAAATCGGTTGAAGAAATTTCCGATGACTCAGAGGATGAACTCGCTATTATTAAATCACCTGAATATATCCAAGACCTAGATGACGAAAAAATACTCAATGAGCAGCGAGTTCCTGTCGATGTTGTTTCTTCTGATAGCGAAACTGAAGAAACTGCTGACGAAAGTGCGCTTGGCAATATCCAACTCACATCAGAGCAGAGTGAGAAACACAATGAAATCACACAGAATTCTAATGAAGATATTTCTTACAAGATATCTGCGATTTACCCATGTGATAATTCAGACGAAGTTGAGCTTATACTCACACCAGTGAGCCCATACTCTCAGCAAAGACAGACAAATGATGCTCAGGAAGGCCAACCTCAAGAAGGCCAGCCTCAGGAAACGCAAGGAATATTAATTCCTGGTAGTTTAACCTACCAAGCAAGTGCTGCACAAATTGATAGCCCTGTTTACTCTGACGACCAGAACGACGAGTACACGCTTACTGAACTACATGTACAACCACCCAAAAAGAACATTACTTTTGAACGTAGAAACTCCAACGAAGACGTTTGTCGGAGCCCAGTGTACGAGATGCCTTCCGAGTATGCCTATCTCGAATCTGTTTCAGAAACAGAGCAAATGAAAGATGTTGAAACTGGAGCAGAGGAATTAGGCAATCAGACTGAAACATTGAATGATGATTACACTAATAACGATAATGTTGGGGAACAGAGCGAAGTGCGCCGTTGTTTGAGTTTGAATAGAAAATATCAGGCCATTATTGAAGAAGAACTAAGAAGAACTGAGAGGTCTCTCCTGGAAAATATCGAACTGCAGCTTGGTCTCACCCACATGACTCAGCGTTCCATAGCACAGGCAGAAGCGTTGGTGTTCAAACGGCTATCGAGTTGTTCGAATCCATATTTTAAAGACAAATCCAAAGAGGGTCCACCTGACAATGAAGACACGAAACTGCGGAAATCTATTGGTCAGCCATATCCTTTTGAAAAGGCTTCCAAACCTTGGAGTAAGGAAGAGAATACAATTCTTTCTGATGCTGTGAAATCCGATGTTCTAGCAACCAAATTAACCCCCTTGTTGCAGAGGATAGAAGCGCTTACTCCTAGAAAATCCAAAACGGAAGAAGAGGAAAGAGAAATCGAAACTTTAAAAGCAGTTATAGAGCAAACAAAATCTCTTCCACTTGCAAACCTTGTTGAAAACTACGCTTTACCTATTGACTGGGAAGACATTTCTTACAAAATGTTACCATCCCGGACACCGTCTCAGTGCGAGATTTATTGGTACAACGAACTGCATCCGTTGTTGAACAACGACCTGTGGACCAAGGACGAAGATAAACAACTACTTAAGTTGGCAAATGAAAACAGCAATGAAGACTGGAATAAAATTGCCCACGAACTAAAGACAAATCGCTCAGCAGTACAATGCCTGGGAAGATTCCAAAAGAGTTTGCACAAAGGTTTTTTGAAAAGCAAATGGAATGAGGAAGAGGACAAACAATTACTAGAAGCCGTGAAAATGTGTGGACTTGGAGCTTGGGAGAAAGTGTCTAGTTTACTGGAAGGTCGTACTGGGGCTCAGTGCATGCATCGTTACACGAAATCTATTGATCCAAATATCAGGAGAGGAAAATGGGATGCAGAAGAGGACGATTTACTTCGGAAAGGAGTGGAGAAATTTGGCTCTAATTGGTCAAAGATTCGTAATTTAATTCCTCGCAGGACGGATTCACAAATTAGAGAGAGGTGGTCAGATGTCCTTGATCCTTGTATTAATAAAGGTGAATGGAGAAAGAAAGAAGACGAGTTGCTATTGAAAGTCGTTAAAGAGCAAGGAACAGGGAATTGGACGAATATAGCTAGTCAAATAAAAGGAAGAAATGACAATAGATGTTGGCGACGTTGGAGACTTTTAATGAAGAATGACCCTACTTCACAATGCCATTCTTATGAACGTAAAAAGGCCACAATGGTTGTCAATTTTTCTGGTCGGCCTCAAGATAGGCCCGCCATTGGACCCGAACTCGTGATTCCTGTAGTGCAATTTACGACAGTTTCACCAATAGCACAGATTACCATCGAATCAGAAGGGACTAACCCAGACGTCAATGACACATGTGTTATAATGGAAGTAAGAAATAGTAGCGAACAAGAGAAAGTAAACCGTGATTCTTGTGGTTCTCTTGCTTCGCAGCAAGTGAAAATAACTGATGAACAGAGAAAAGGAAATAACGAAATACACACCGGTGATATAAAAGAAGGGAAGGAAATTGTTCAACAAAAAGAAGAATCCATTTATGCTACAAGTGAAGGTAACTCCCAGGATGCCTGTGCTCCTCCTGATGGACATACAGCGAAAAAGAGTGACGATCCAAATACAGCTTGTTCAGGTGGTGTTATTCTTTCGGATAGTCGACATGGGTTAACGCACGAAATTGTCATTTTCTCAAGCTCGTCGTCTGAAGAAATGCACGCGAAAACTAATGATGGAAAACTGGAGGAATGCGTGACTGGAATTTGCTCCAAGAGGAAAAATGGTGCTATAAAAACTGGTAATGCTAAAAAGAGACGAAGGAGGATTTCGAAGGGCAGTAAAAATAAACAAAGCAAACACGGTGCGACGTCTTGTAGTGAAATTGACTTAGAAAATAATGACAAAGAAACAGATGGTGCGACAGGGATAATTGAGGAATGTGCGGACAAAACTGTTGCAGGCGACGCAAAAAGGAGTGCAGCTTCTGTGGATAAAAACGGTAACGCGTATAACAGTGCAGCTCCCAGTGCTCGAAATATCACAGAGAATGCTATGGATAATGGAACTATAAAGCAACATGAAACTGTACAAAGACGATACCCTCTCAGGTCTTCTCGCGGACCTCCTAAAATTGACTCAATATTTTCTGAGATAGCGGTGGATACACGAATTGACAAAGTGGTGAGTAAATCTGCATTCAAGGCCACAACGACTAGGCGAGGAAGACGCAAAAGTCAAACTCCTAAAAAGCTCGTTAATGATGTCGAAAAGAGCGCGCGTGACGCAAGCACAATACCAACGCGCGCGCCAATTGTACCGCCCCTTCCTCCGTCGGCCACCACTTTAAATGCGTTTAAAACACTGTTGACATCACGGAAATCCCTTCAGTCTCAAGCAAACTGCTTGGAACAGGCGCCTGCAAAACAGAAAGGTGCCGAGGAGAGTAACACGTCAATCCAAACTCGTGTAAATAACCCTTTAGCCGACCGACTTCTTGTTGACTCTGGACAGGCATCTGTAGACGATTATTCCCATTCGGTGCCATATCAACAACTCGTAAACAGATTTAAAGGTCTCTTCTTATGGCCAGGCTTTTTATCAATTGTGAATCCCAATTTTGGCAGTAAACGTGGAGGTACTACTTCAACACCAAGAAACAATACAAATCAATCATCCTTACGGAAACGTACTTAG

Transcript

Ppa0G030750

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5SXM2	snRNA-activating protein complex subunit 4 OS=Homo sapiens OX=9606 GN=SNAPC4 PE=1 SV=1
Q54NA6	Myb-like protein L OS=Dictyostelium discoideum OX=44689 GN=mybL PE=3 SV=1
Q8BP86	snRNA-activating protein complex subunit 4 OS=Mus musculus OX=10090 GN=Snapc4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001352 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00249 all species →	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan
PF13921 all species →	Myb_DNA-bind_6	Myb-like DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR017884 all species →	Domain	SANT domain	Interproscan
IPR017930 all species →	Domain	Myb domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR051575 all species →	Family	Myb-like DNA-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46621 all species →	SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0001006 all species →	Molecular Function	RNA polymerase III type 3 promoter sequence-specific DNA binding	Interproscan
GO:0019185 all species →	Cellular Component	snRNA-activating protein complex	Interproscan
GO:0042795 all species →	Biological Process	snRNA transcription by RNA polymerase II	Interproscan
GO:0042796 all species →	Biological Process	snRNA transcription by RNA polymerase III	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G030750.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.