Gene detail

Detailed information of Ppa0G033380 in Paragorgia papillata

Genomic Location: Contig00015:16047763...16065370
NR annotation: XP_028405436.1, amyloid-beta A4 protein-like [Dendronephthya gigantea]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Ppa0G033380

ATGCCAAACTTTACACAATGTGAATTTCTACATGATGTTAAATCAATTAGCTTTGAGACTATAACTTTAAGTACAGAAGAACATTTAATGTTTGTTGGTGTAGCTGGTGTTCAAAAGAGAAAGTATATACATGCACAAGCGTCCAAAATTGAAGATCTACAAGAGTTAAATTATGAACCTAAGATTGCCATTCAGTGTGGCAAAGTTGCAAAACATGTGGATGTTGATTCTGGAAAATGGATAGATGATGTGAATCAAAAGAAGTTATGCTTAAATGATACAAAACTGATACTGAAGTACTGCGTGCAGATGTATCCAACGATTGACGTAAAAAACATTGTCGAGGCCAATGAAAATGTAACTTTGTGTACTGGAAGTGATTGTGAAGAAACATTTACTGTCATTCCTTACAGATGTCTTGTTGGTGTGTTTGAGGCTGATGCACTGAGTTATCCACCAAATGCCAATTGTGACTTTGATCATATATATGACGCAAAGACCTGTAAAAATCATGACTACTGGCGTGACCGTGCTTCCCAGAACTGCAAACACAAAAGAAAAGAATTGGAACAATATGGCGTCCTCTCCCCATGTGGAACTGATATGTTTGCAGGGGTGGAATATGTGTGCTGCAATAAAACTAAAACCGTAGCTGAGATATTTGGCGATATTCTGAATCAGTTTGCCAGCCATATACCTGCATCAAGCAAAGGTTGTGATCGAACCACTTATGATAGGAAAGCTCGAGTAGTCCAAGCAGAAAAGAACAAGAAGGTTGAAGGAGTGGCAAAAGATTTGAAAGAAGCCAAAACACATATGGAGTCGTTAAAGAAAGACGACCCGCAGCAAGCCAAGACCTTGTTTAAATCTGCATTGAAGGGGCTACAGGGCACTCTTAGAAACATAGACAGACAAGCTAAATTGGATGATTTGCAAGTAGATCGAGAGCGTCGCGAGTGCCTCCAGATTGATATCAACCACAAAAAGCATCTAGCGATGAAGAGCTTCTTGGATGCTGTTCAACAACATGCTGAAAAACCAGTCAAGATTTTGAGAACCTTCAAACGTTTCATGCGAATCGTTCAATCTGATCAATCGCAAAATGCCCGTTTCCTAGCGAAAAAACTTCACTCTAAGTCATCCAATGCTAAAGATGCCAAAGAGATGTTTACATCACATACCAACTTACTTAAGACAGTTTTAAAAGATGGCGTTGAAGTACTAAAACATGTGAAATCCGTGCTGGGAAAAGTTGACTTCAAGTTACCATCGTTTGCCATGGATATTGATTTCAGTATCCTCTGCCATTTGAAGAGAGAGGAGGAGGATGACGATGATGATGATGATGATGACGACGATGATGATGATGACGATGATGATGAACGTAAAAATACCGCTGGTAAACATTCCCAAGGTGCTAAAGGTGAGGATGACGATGAGTTATCCCACGAAAATGAGCACGAAGATTACGGGGACCATCCTCTCAAGTCACGTCCTGTATTTGCCGCAGTTATCGGTCTCAGCTGTGGGGCATTGGTTATTATGGTCGTTATTGTGCTCGCGCTGTTCTTCCGTAAAAAATCTTCGAAACGGCCAACAAAGACCGTGATAGCCGAGGATTCCCAGGAAGAGCGTCATCTTCTCAAGATGCAAGAAGATGGGTTTGAAAACCCAACCTACAAATTCTTTGCTAATTAAAAAAGTAAACCCAATATGGGTATCAGCGCGTACTATAGGTGTAGAAATTTTTGATCTTTGTATACAAAACGCGTGAATTAGTTCATTATGTAACAGAATGCTGATACGTTGGTCACAGTGCAGTGTGGCTTGCCACGACTACATGACGCACCAGCTTTTAATTTCAGCTGATTTTTTTCGCCTTTTAGACATACTTATTGATTCGTTTATGTGGATAATACTCGCTCACTACCTAGTAAAGTCGTTTTACAGACTTAACTAATGTGGATATAATTTGACCAAACTATTTACAATGCTTTATATATCAAGGAGCAGTAACCAAATATAATTACGTGTAAACGGTTTATGTGCTAATAAATGTTTTGTTAACCAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P79307	Amyloid-beta precursor protein OS=Sus scrofa OX=9823 GN=APP PE=2 SV=2
P12023	Amyloid-beta precursor protein OS=Mus musculus OX=10090 GN=App PE=1 SV=3
P08592	Amyloid-beta precursor protein OS=Rattus norvegicus OX=10116 GN=App PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006067 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12924 all species →	APP_Cu_bd	Copper-binding of amyloid precursor, CuBD	Domain	Interproscan
PF02177 all species →	APP_N	Amyloid A4 N-terminal heparin-binding	Domain	Interproscan
PF12925 all species →	APP_E2	E2 domain of amyloid precursor protein	Domain	Interproscan
PF10515 all species →	APP_amyloid	Beta-amyloid precursor protein C-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036454 all species →	Homologous_superfamily	Amyloidogenic glycoprotein, heparin-binding domain superfamily	Interproscan
IPR011178 all species →	Domain	Amyloidogenic glycoprotein, copper-binding	Interproscan
IPR008154 all species →	Domain	Amyloidogenic glycoprotein, extracellular	Interproscan
IPR015849 all species →	Domain	Amyloidogenic glycoprotein, heparin-binding	Interproscan
IPR024329 all species →	Domain	Amyloidogenic glycoprotein, E2 domain	Interproscan
IPR036669 all species →	Homologous_superfamily	Amyloidogenic glycoprotein, copper-binding domain superfamily	Interproscan
IPR008155 all species →	Family	Amyloidogenic glycoprotein	Interproscan
IPR036176 all species →	Homologous_superfamily	E2 domain superfamily	Interproscan
IPR019543 all species →	Domain	Beta-amyloid precursor protein C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23103 all species →	ALZHEIMER'S DISEASE BETA-AMYLOID RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008201 all species →	Molecular Function	heparin binding	Interproscan
GO:0046914 all species →	Molecular Function	transition metal ion binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G033380.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.