Gene detail

Detailed information of Ppa0G035290 in Paragorgia papillata

Genomic Location: Contig00018:1651805...1654786
NR annotation: CAB4005563.1, E3 ubiquitin- ligase DZIP3 [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Ppa0G035290

ATGAATTCGTCGAAGGATCACAACAACTGGATAACCGTCGGAGCTTTAATCAATTTAATTAAAAAACCAATAGCTATTTATGCTGATCACATTGTCAAAAATTGGCACCAAAAGCTGCATCATGATTGCAATGCATTTGGAACATGCACCAATACAGCAAGTTGCCTGACAAAAAAGAAATCACACGATCTTTGTTCGTCTTGCAAAGGATGGTATAGCGAGCTCGCGTCGTCACACCGAAATGGGAATAAGTCTCAGATTAAATGGCGGCAAAACTGCGATACATCAAAATGGCCTGTCGATCCATGGGAAGTAGCCAAGTTCTTTATGTCCATCCTTGGAGACAACAAGAATGCCGTTAAGGATGCAGAATCCACTGATTTATCATCTCTTCTTAACGTTCTCGAATGGATGGAAAATGTAGCTTTTGGTGGAGACAGACGTGTGGATCTGGACCTCGTGAGGAAGCTCCGTTCAGAAGTCAGAAATACCTGGGCACATGCTTCAAACCAAGAAATGACAGAAGCTGAGTTAAACAACTCTTTTTTTATTGCCAGGGAGTTTCTTGCTGACCTTGACACAGTCTTTAATCGTAAAGAAGTCAAGGAATGCACCGAAGAGATCCAATCTTTACAAACTAACGGACTAACCAATGTCGTTGAAGCTGCGTTAAACAGCTTGCTTTTGCTGCGCGAAGACCTGTGTAGGAATGAAGAGAAACACGAACAAAAATTGAAGGAACTTGAAGAGTTAATCAGAGAAATACAAGATAACATAAGTGCTCAAGAAAACGAAAAATCGAAGCTAAAATGCTGCTTACCCGAGAAATTATCAACGTTTGTTAGTCGTGACACTGAAATAAATTTAGTACGTTCTCTTCTGGTAGAAAAAAGTTGTGGAGTTGTTTCGATTGTTGGACCACCAGGGTTTGGCAAAAGCGCTATTGCAGTCCAAGTTTCGCATCAATTAAAAGAGGAGAATATTCCTGTCATCTTTTCATATCTGTCCAATACTTCCACCGTTCCTGAAGTGATTCAACGTCTTTGTCGTGATGTTGGTGTTTATCCTGGAGAAGATCCTAAGTCTTCATTGATATGCTGGTGTGGAAACATCAAAGAAAAAGTTGTCCTCGTCATGGACAACATCGAGCAGTTACTTGAAGGCAACACTAGATCCGAGTTCACTGATCTGGTGCTTACGCTTCGCAAGAATTCAAATCAACAGATACAGATTCTGACAACGTCAAGAACTGTATTCTCAATTCCTAACCTAAATGAGGTTGGAAATGTTTTAGTAGGAGAGATGGATGATGAATCCAGTGTCGCACTTTTAAAGAAGTGTTGTCGTAATGAAGAAATAGAAGATGAGTACTTGCGCAAGTTAGCTAACCTGTGTGGTCATGTTCCCCTTGCCTTGTGCCTCGCAGCTTCCCGAATTCATGAATTTGAAAATCCTGCTGAATTGATAAGGTGGTTAGAAAAACGGCCTATGGAAGCTTTAAAATCCTCAGAGCGCAACCAACATGTCCAAAACGCCATCGAGATGTCTTTCGAAAGGTTGAAAGACGAAGACAAGAAAACGTTCGTTCGTCTTGCAATGTTTGATGGAGATTTTAATAGAGATGCTGCTCAAGAGATTATTGAAAGAGATCCATACCAGACCCAAGACGTTTTGAAGAATCTCGTAGATCGAAGTCTGATGCAGCGCACTGCGGTTGGACGCTTCTTGATCCATTCTCTTGTTCGAAGGTTTCTGACCGATTACGATCAGCTTCAAGATGAAAGGCCAGCGGCACAAGAACTGATTGTGAAACACTTCCTCAAGTTGTGTCAGTCGTGGACCGAAAAGTATTATTCCAAAGATGGATTCATTGATGCAAGGGAGTTATTAAAGAAGGACGCCCACAATGTCGAAGAAATGTTAAAAGTCTACCAAGGGGCAAACCTTGAACAAAGCATCGTCGAGTCTTTGCTATGTAGTGGTATATATCAGTCGTTATCCAGATTCTTTTACAACTTCATCCGATGTATTTTCCCACAAGTGGTGGTAAGAAAGTTCCTAGAATTTTGTGTTGAATTGGCAAAGAGGGAAAAGCAACTGGCGATTCAGATCAATTTCCAATGTCTGCTAGCAGATCAAGAAGGTCGCAAATCGGCATGGAAATCTAGCGAGTACAGCAAAATGATTGAGGAAATCAAGGAAGCGTTTGACAGAAATGAAGAAAACCTGAAAGAAGATAGTGCCCTATGTAGCCATTTTTACTATTGTTATGGTCGGTTTCTTTCACGCGGTGATTCAACGTCATCATGCCCTGATCGGCTAAAAGTAGCTAATGATTACCTTGAAGTATCCTTACGTTTACGAGAAAGCAGAGAAGGAAATCCTGTAGAGAAAGCTGATGAGGCAATCACGCTATGCCAGCTTGGATTAATAAACAGGAGACGTGCCAAACCAGATGAAGAAGCGTATGAAAGTCACATGACCTGTGCTAAAAACCACTACGAGCGAGCTCTGGAGTCAGCCAAAGAGCTTTTGGGCGATCACGAAGTAACCTCTACTTGTTATAAAGTTCTTGGTGATTTGTATTTGGTTTGGAGACGGCTAGAAGAAGCCCTGCCGTATTACAAAAATGCAAAGGATATGCACAAGAAACTAGGGGGTGATTTTAGTGAATCTATGGTTAACTTGCTTAAGAATTATGGCTTGTGTTTCTCCTATATTCATCGTCTTGAAGAAGCAAAAGAATTGTTAAATGAAGCTCGTGAGATAGCTGACAAGCTTGCTGAAGGACATACTCCTTGTAGAGCTCAGGTGTACTTTAGTTTAGCACTATGTATTCCTTTCTGGAAAAAAGATTTTCACGAAGAAGCCGCAGAGTACGCTGGAGTAGCAATCGAGTTGAAAGAGTTTTTGAACGAAGGGAAGATAAGAAAAATGGAGGAAATTATACAAAAAGTAAGAAATACTGAGATGATCAAATGA

Transcript

Ppa0G035290

Protein

Uniprot

Uniprot term	Description
Q9S0Y6	Regulatory protein AfsR OS=Streptomyces griseus OX=1911 GN=afsR PE=1 SV=1
P25941	Regulatory protein AfsR OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) OX=100226 GN=afsR PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF15112	DUF4559	Domain of unknown function (DUF4559)	Family	Interproscan
PF00931	NB-ARC	NB-ARC domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR027897	Family	Protein of unknown function DUF4559	Interproscan
IPR002182	Domain	NB-ARC	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47691	REGULATOR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0043531	Molecular Function	ADP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19360	NPHP3; nephrocystin-3	-	Cilium and associated proteins	ko03037	deepkoala