Gene detail

Detailed information of Ppa0G045620 in Paragorgia papillata

Genomic Location: Contig00029:1918931...1936184
NR annotation: XP_028391823.1, uncharacterized protein LOC114516514 [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G045620

ATGAACGGTGTTATATTTGTCATCTATGCATGGTGCGTAGTGCAAGTTTCCAGCTCGATAGAAAAGCACAAGGCAAAGGAGAAAGCCGTTAATAGGCAAAGAATACGTATATATGGTTTAAAAAAGAAGAAAAGTTACTTATTTTTTGACAATAGAAGTGATCGACAGGTTGAGTTATGGTGGACGGATAAGTTGACTGGCCAGAATGAAAGATATACCGTACGTATACTCTGGCCTGGAGCAACTCACGAGATGTTCTCCTATACTACTCATCATTGGACAGCTATAGAGAAATACACTAAAAAACGTTTACTGATTAACAATGAGACAGTGTTCTCGCCGCAATCGAATGAACCCAAAAATAGAACTATTCTTATTATACGGCGTCCAGGTATCAATTCTTACAGGAACAAAATTTTTATCGAAACTATGGTGGTAGTTGATAGATCTGTCATCGCGTTCCACGGAAGCAAGGAAGATGTTACAAGATATGTTTTAACTTTATTGAGAATGTCAACAAAAATACTTCAACACCAATCACTGACGAAACTTGGTGTAAAATTGACTCAAGTACTTTCCAAGTTAGTTTTACTAAACGAAAAGAATGAACCAAACATTGCTTCCAAAGACGGTAAGACGGCATTTATTTCTGCGTGTGAGTTCATGACTGAACACGAAAGCAGAGGCTCCGACATATTTGATCAAAAAATATTTCTAACAAAGAACACATTTAGCAATGCAGGCTTTTCATACCATTATGGAATGTGCAAAAGTAACAGCAATTGTGCTTTAATTTATAACAACGGCTTCACCTCAGCGATCTACATAGCACACGAAACAGGACACTTACTTGGTATGGACGACCAGAAATTACCTAGAGAAAATCCCTTCGTTATGTCAAGTCGAATATATGGACATTTTAATAACCACGACTGGTGTAGATACAGTCAAATTGCTCTGCTGAAGAACATCAGAGATATGTCTTGTCTGAATAACAAACCTTCAATGCACGACAAAGATTTCCCATTTGTGCACAAGTATCCTGGAGTCCACTTCAGCATCCTTAAGCAGTGCCAGCTTACATATAAGAAGAACTATACACCTTGGCCCTACTCAGTAGATCAGTGCAAACAGCTTGAGTGTAAGAAGCCGACTAAACCGCCGTATACACCATCATTTCAATTTGACGGTTCACGACCATTGGATGGGTCTGAATGTGGAACCAATAAGTGGTGTTTATCTGGTGTTTGTCAAACGAGAACGGAGCCAATTTGGCTGTCCGCGGCAATTGATGGAAACTGGGGCGAGTGGAAAGCCTGGAAATCGTGTTCGAGAACATGCGGCTCTGGGATCAGTACAAGAGAACGGGAATGCAATAACCCGCTGCCTCGCTACGGCGGGAATGCTTGTGTTGGTATAGCAACTGAAGTACGAGTCTGCAATACTGGGAAGAAATGTCCAGGTAAACCTCTAAAACATGAGGTACTGTGCTCGGAAATGGGAGCGAAAACCGATAGAAAACGACAGTGGGGCATATACGACGAGGCCAAAGTCGGTTGCGATGACGTCATCAGTTCTGGTAAGAAGTACGACAAGTGCAAGGTTTGTGGCGGAGATGGAAGTTCGTGCAAAGGTAAAAGTGTTCTGGACTGTGACTTTAACAATGATTTGTGCCAGTGGAATATCGTGAAAAACCATGTCAATGATTTAGGTTGGTCAAGGAAGGAAGACCAAGGACATTACTTGTACATGGAAACATCAAGCTCACAGCTCGAGAAGAAATTCAAGGCAAGAATTGTGAGCCCTGAAGTGAGTGCCTCGGTAGCCTGTCTGTCGTTTGACTATCGAATGAATGGGGATAAGATTGGTAGACTCAGAGTAATGCTGAGCAAATCAGGGAAAATTTTAGAAAAGAAATGGTTAAAAAAAGGGTCGCAAGGCGATGATATGTGGAGGAAAGCTGATATAAACATCAAAAGAAACAGTCCTTACAAGGTTGTTATCGAGGCCGTTGTTAAAAACCGCCAGCATGGTGACGTAGCGATTGACAACATTCAGTTTCATCGACAGAAGTGTTCGTCAGTCAAGAGGGAAATATAA

Transcript

Ppa0G045620

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O15072	A disintegrin and metalloproteinase with thrombospondin motifs 3 OS=Homo sapiens OX=9606 GN=ADAMTS3 PE=1 SV=4
Q8C9W3	A disintegrin and metalloproteinase with thrombospondin motifs 2 OS=Mus musculus OX=10090 GN=Adamts2 PE=1 SV=2
P79331	A disintegrin and metalloproteinase with thrombospondin motifs 2 OS=Bos taurus OX=9913 GN=ADAMTS2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002069 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01847 all species →	VHL	VHL beta domain	Domain	Interproscan
PF00629 all species →	MAM	MAM domain, meprin/A5/mu	Domain	Interproscan
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF13582 all species →	Reprolysin_3	Metallo-peptidase family M12B Reprolysin-like	Domain	Interproscan
PF17771 all species →	ADAMTS_CR_2	ADAMTS cysteine-rich domain 2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024053 all species →	Domain	von Hippel-Lindau disease tumour suppressor, beta domain	Interproscan
IPR001590 all species →	Domain	Peptidase M12B, ADAM/reprolysin	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR037140 all species →	Homologous_superfamily	von Hippel-Lindau disease tumour suppressor, beta domain superfamily	Interproscan
IPR000998 all species →	Domain	MAM domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR036208 all species →	Homologous_superfamily	VHL superfamily	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR050439 all species →	Family	ADAMTS and ADAMTS-like	Interproscan
IPR041645 all species →	Domain	ADAMTS, cysteine-rich domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13723 all species →	ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0030198 all species →	Biological Process	extracellular matrix organization	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G045620.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.