Gene detail

Detailed information of Ppa0G045780 in Paragorgia papillata

Genomic Location: Contig00029:2094834...2109279
NR annotation: CAB3977168.1, enhancer of filamentation 1-like [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G045780

ATGACTTCGTACAAAGTTGTTTTAGCCAAAGCTCTTTACAACAATGATTCCGAAGCCGAAGATGAACTGTCTTTTAAGAAGGATGATCTTATCACGGTCCTTGAGACGGATTTGGAAGGAATGACCGGCTGGTGGCTTTGCTCACTTGGTGACAAACAAGGCGTTGCTCCGGGCAACCGACTGCGGTTACTCTCCTCCGACGAGATCTACGACACTCCGGGGCAGGCGTACAAGGAGAAATATGGAGATGTTGACTATGACGTGCCTAAACCACACCAGTCTTCCGAATACCAAGATTACGCCATCCCCAAGTCACCTTATGGTAACCTACCCGTTCCAGACTCCCAGCGCCACGGCTTTGTTCTCCCAAGCCCTCGTATACTGCAGCCGTTCGATGCGAGGAACAGTAATTCTTCCGATGGACTGGTGACTAATGAAGTCTACGACGCGCCCTCCAGATGGAGCTCGGAGAGGTCCAGTGACGAGTTTCGTTTCTCCGGTGAGGTTTATCAGGAAAGTGGACCCGAGGATATGTACGACGTACCGTCACGTAATTCCATGGAGTCAGACGATGGAGGCCTGGGTCAACAAAACAACTCGACCCTCAATGTCCCGGTTATCCCACCAAAGACTCGGCTTTCAAGTAACGGTTACCACGGTAACAACAGCGGCTTGCGTGAAAGCCAAGAGCTTTATGACTCGCCAACAAATCTTACTCAAGACATCAATGATAGCGATGTGTACGACCAGTTGCCCTCAAAGGATGATAAAAAATTAAGTGTACTATTCCGATCACTATCCAATGACAATCAAGTCTACGATACCTTGCCAAACGAGATTTACGATGTGCCTCCGCCAGTACCCGAAGATATCTACGACGTACCGCCGAGTGAGTCGTCATATCAGAGTTCTTACCAGAGAATTGATTTTCTAGCTGATGGCAATAACAACCCCCCTGTTTATTGTGATGAGACAAGCGCAAGTGATTTGGCTGTTGCTGACGAATCCTTGTACGATGTTCCGACGGAGAAGGATTTGTCGCGGGGGGTGTATGATAATTTCGAACTTACCAAGCTGGAGTACGAACTGAAGGTGAGTGAGGAGCTGCAGGTTGAGATGGCGAGGAATGGGTCGAGTCAAAGAAATGAACCGAGTCAAGGAACTGGGTCGAGTCAAAGTGGTGGGAAACAGCCAAAAAAGCAGAGCAGTGAAAGTGATGATTATGTGGATTATGCAGAAATTTATGGAATGGGACAAGTAGAACGACAAGATACTCAGGCGAGTGAAAAACGAAAAAGTGAATGCTCTGTGATGGATCGCATTCATATGGATAAAGTCCGTGAACTTCGAATTAGTCACGGCGTTGCTATGACAAACTTGGATAAACTTCAGCAAGCGGTCGACGTTGCTGTTACCAAGTTACTGAGCTTCGTCACCGACGACTGGAGAAAACCAGAGGTTTACGCTTTGAATATTAATGGTATTCGTGAGATCTCTGGGAAGGTTAAGGTAGCTCTTCGACTTCTAACAGAGTTTGGTTTGGGTGCTTTGGTTAATTCAAGGAAGCTTCCTGATGGCGACACTTCGAGGAAGATCAAGGAGGCTCTAGAGCCGTTGCTTCAAATGTACTACTCAATAAAGAGTGCTATTCAACAGTTAGACGAGACAAATTGGAGATCGGCCTATCAGATGAGCGAAGATGATGAACTGAATAGTATTGCTAAGATGGCTCAAGGTATTCCTTGTGATGCTTACAATCTTGGGGCAGTTATTGCAAACGTTGCACCGTTTCTGTTTGACAAAACCGCTGATCATGTGTGTTCTGGGCCAGGATCTGGCGTCGCTGTAACCAAGACGTCTCCTAGGCCAATAAACTCCTCATCGCCTGTGACCGTGCAAAAAGAAAGCATAAAGGGACTGGAAGCGTCCAAGGTCGTATCAGAACCTGTTGGTATCCAAGCGAAACAGTTGGTGATGCCGAAGACATCCGAAGGTCTTCCGATGGTTTCCCCGAAACCGAAGAGAAATCCAAATTCGAAGGAAAACGGCAGTGGACCTAGAGAGGAACGGTCGCTTTCTGATAACGTGTCCGAGTTAACGAACAACTTACTAAATCAAATCGAAGACATGAAGCCTTCGCCAGGTCTTCGTCGAAAGGGCAGCAAGAAATTAAGCCCGAGGACTGTGAGGCGACTCTGTTCTATTGGGCTGGAAAACGACGATAAAAATAGTAAGAAAATTTTTGAAGACGCTGCAGCCATTCCCGTAAAGCCGTCGCGACAGTTCAGCTCTCCGGCGGCGAGCGAAGACACGAGCAGTCATTTTTTCACACATGACACGAAAACGTCTTTGTCGGGCACATTGTCAGATCCTGGCCCTGGTCTCGTCAAATCATTTCCCGTGAGGCAGTTTGAGCCTTTGCTCGAATCTCCAGAAATCCAGGTCGGAGACACGGACCAAAAAGACTTTCAGCGTCTGAATTCGATCGTGGAGAAAATGGACAGCCAGTTTATCATTCTCAAAGAAGGCATCAAAAGTTTCGGTGAAAGCGTGCGCGAACGGCAAAAACCCAAAGTGTTCGTTGCGCATAGTAAGTTCATTGTTTTGAGTGCGCATACGTTGGTCTACGTTGGTGACGGCGCTTCACGTAGCCTCACAAACGCCAAAGTCCAGAAAAAGATCTCCACAGTAACGAACTCTTTGTCAGAAGTTATCAATGATTTTGTCGAGAGTATTAAAATTGCCGCTAGACAATATCCAGAGGAGACCGCTATGAACGTGATGATTAAAAGCGCGGCAAAAGTTACTGAGAAAGCACTAGAACTGTATAAAGTACTCACAGACCATGCCGAAAGTTGA

Transcript

Ppa0G045780

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O35177	Enhancer of filamentation 1 OS=Mus musculus OX=10090 GN=Nedd9 PE=1 SV=2
A0A8I3PDQ1	Enhancer of filamentation 1 OS=Canis lupus familiaris OX=9615 GN=NEDD9 PE=1 SV=1
Q14511	Enhancer of filamentation 1 OS=Homo sapiens OX=9606 GN=NEDD9 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003917 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan
PF08824 all species →	Serine_rich	Serine rich protein interaction domain	Domain	Interproscan
PF12026 all species →	CAS_C	Crk-Associated Substrate C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR014928 all species →	Domain	Serine rich protein interaction domain	Interproscan
IPR038319 all species →	Homologous_superfamily	CAS, serine rich four helix bundle domain superfamily	Interproscan
IPR037362 all species →	Family	CAS family	Interproscan
IPR021901 all species →	Domain	CAS family, C-terminal	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10654 all species →	CAS SCAFFOLDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007169 all species →	Biological Process	cell surface receptor protein tyrosine kinase signaling pathway	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0090527 all species →	Biological Process	obsolete actin filament reorganization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G045780.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.