Gene detail

Detailed information of Ppa0G046550 in Paragorgia papillata

Genomic Location: Contig00029:2966296...2975699
NR annotation: XP_028392608.1, uncharacterized protein LOC114517148 [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G046550

ATGGCATTAATTCGTACACCTGTCAGTGTAAGACTGGTTACGGCGGGAAACATTGTGAATCAAGTATTGTTTTCTATAATTTCTATTTATTTAATAGATGTTGACGACTGTTCTCCACCTCCTTGTAAAAATGGCGGAACTTGTGCTGATGGGGTCAATTCTTTTACGTGTAAATGTCCTGCAGGATTTATCGGAAAGAATTGCGAAACAACGCAATGCACAAAGAGTGCCGATGTTGTATTAGTGGTAGATGGTTCCGCAAGCATAACCGCTTCGCACTTTATCCGCGTTAAAACATTCCTGAAGGAACTCGTGTCTCGTTTTAACGTGTCTGAACAAGGCACCAATGTCGGTCTCATTCAGTTCAGTACACCATGGAAGACAAAGATTGAGTTTGGCCTCGACAAATACAAAGATGTATCAAGCATTAACACCGCCATTGACAACATGGTTTATCAGAAGGGCAGGACGTATTTAGGAGACGCACTTCGACGGGCAAAAATACAAGTGTTTGGTCGTCGTGATGCGAGCAGAAAAGGTATTCCTAAAGTATTGATCGTCCTGACTGATGGTAGAGCAAACGATCAAGCTTCTGCTCTTCGAGAAACTACATCTCTTAAACGACGAGGTGTAAGGATTATTGGTATTGCTGCTGGAACACCACTAAACATTGATCGTTTTATTAGCAATCTTTTCGCTATTGTGGTAGACAAGTCTCTTGTGTTCAAGGCAAGGTTCGCCGGTCTGGATACCATTGTTGATAAGATCACAAAATCTACGTGCGATATGGTAACCGACCATTGTAAGCCTAATCCTTGCAAACAAGGTGGTCGTTGTGTCAGCGGTCACACCTCGTTCACGTGTGAATGTCCAAGTGGGTACACTGGCAGGCTATGTACAAAATGTGTCTCACCGGACGTTCTACCTTGGATATTCATATCCAGTTCTATTCGTACAATCGACACTGGTATGACGTCATCAGTATGGGCGGTTGCCACGAATGGAAAGGTTTACTTGATTGAAGGCAAGCGTTTGACCCAAGTTGGAGGTCTGGGAATGAAACATGTCAGTGCCGGGGAAGCTGGAGTCTGGGCTATAGCAAAGAACGGCAAATCGTACTTCCGTCAAGGCATTACGTCATCTACACCCGCGGGCACTAAGTGGGTCGGAGTTTCCGGTCGTCTGCTTCAGGTGGATTCTGGACCAAGTGGTGTGGTCTACGCGATTGATTCCACCGGTAAGGGTTCGTTCTGGCGTACGGTACCTGACGCTCCCTCCACCATGTCGTATGTCAGTTGTGGAAGTTACGGCTGTTGGGCAAGTAATTCAAGAAATATTTGGTTTAGAGATGGTGTTTCGAAATATCTTTGCAAAGGAACCAACTGGGAGAGAGTACCAGGTTCCCTTCGACAGTTCGAGGTTGGAGACCACGGGGAATTATGGGGAATTCATTCAACCTCAACTTTGTGGAACAGAGTTCGCATAAGTGCTGATCATCCAACCGGGAAGGGCTGGAGACGAGTTGGAAGTTTCGGATTTAAGCACGTGACAGATGGCAGACCTGGTTTATTTGTGGTAACCGATCAAGGAAATGCTTACCGAAAACATTTCTGTACAAATGAACCAGCCAATCACTGTACGTCTTCGCCATGTCGTAATGGAGGTGTTTGCACCAATAGCGTGCATACGTACAAATGTCAATGCAATGTGGAGTACACAGGAAGAAACTGCCAACACAAGACTCCTGTTACACGGTCTTGGGTCAAACTTCGTGGAGACATGAAGCAGATAGACACCGGTGTGACGAACTCACTGTGGGGAATAAACCATGCTGGTCAACCGTTTGTATTTAACAATCGCACCTGGGTCCCAGTCGACCGTAAATTCACGCAGATTTCATCAGGACAGGCGGGCGTGTGGGCTATTGAGGCAAACAAGCATATATTCTACCGTGCGGGCATCAGTCACCTGAACCCAACTGGCATGAAGTGGACCCAAGTAGGAGGCAGTCTTGACCAAGTTGACTCTGGACCAGCAGGTATTGTGTACGGCATTGACCAGAATCACAATCTGTTTTGCCGTAGCGGTATCCAGCCAGGCTCACCCACAGGGTTGCTATGGAAACGTATCCGAGGTACCTACAAGCACGTGACGTGTGGCTCCGAAGGATGCTGGGTAATAACTACCACGAATAAGATTAAGTTCCGTTTTGGTATCACTGCTGATTTTTGTAAGGGAAAACTTTGGATCACGGTATCAAGCTCTCAGAAGATGCTTCATATCGAGGCTGGAAGTAATGGGTCACTGTGGGGCGTGGCTGATGACGGCAGAGTGTGGTACCGTGAAGGTGTCGACGAACTGCATCCATATGGTCAGCGGTGGATCAAGCTTAGTGCTGACGATAGATTCACCATGGTAACAGCTGATTTTAACGGCGAATATGCTTTGAAGAATTCTGGCGATGTCTATTACCTCAAAACGCAAGGGTCATAG

Transcript

Ppa0G046550

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P32018	Collagen alpha-1(XIV) chain OS=Gallus gallus OX=9031 GN=COL14A1 PE=1 SV=2
O42401	Matrilin-3 OS=Gallus gallus OX=9031 GN=MATN3 PE=2 SV=1
Q05707	Collagen alpha-1(XIV) chain OS=Homo sapiens OX=9606 GN=COL14A1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004908 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan
PF12661 all species →	hEGF	Human growth factor-like EGF	Domain	Interproscan
PF19193 all species →	Tectonin	Tectonin domain	Repeat	Interproscan
PF00092 all species →	VWA	von Willebrand factor type A domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR051355 all species →	Family	Notch and Slit guidance protein	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR006624 all species →	Repeat	Beta-propeller repeat TECPR	Interproscan
IPR013032 all species →	Conserved_site	EGF-like, conserved site	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45836 all species →	SLIT HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007219 all species →	Biological Process	Notch signaling pathway	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0009986 all species →	Cellular Component	cell surface	Interproscan
GO:0043235 all species →	Cellular Component	receptor complex	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G046550.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.