Gene detail

Detailed information of Ppa0G046750 in Paragorgia papillata

Genomic Location: Contig00029:3154341...3155768
NR annotation: XP_028410171.1, cytosolic iron-sulfur assembly component 3-like [Dendronephthya gigantea]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A8WH18	Cytosolic Fe-S cluster assembly factor narfl OS=Xenopus tropicalis OX=8364 GN=narfl PE=2 SV=1
Q7TMW6	Cytosolic iron-sulfur assembly component 3 OS=Mus musculus OX=10090 GN=Ciao3 PE=1 SV=2
Q9H6Q4	Cytosolic iron-sulfur assembly component 3 OS=Homo sapiens OX=9606 GN=CIAO3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005194 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02906 all species →	Fe_hyd_lg_C	Iron only hydrogenase large subunit, C-terminal domain	Domain	Interproscan
PF02256 all species →	Fe_hyd_SSU	Iron hydrogenase small subunit	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004108 all species →	Domain	Iron hydrogenase, large subunit, C-terminal	Interproscan
IPR003149 all species →	Domain	Iron hydrogenase, small subunit	Interproscan
IPR009016 all species →	Homologous_superfamily	Iron hydrogenase	Interproscan
IPR050340 all species →	Family	Cytosolic Fe-S Cluster Assembly Factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11615 all species →	NITRATE, FORMATE, IRON DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016226 all species →	Biological Process	iron-sulfur cluster assembly	Interproscan
GO:0097361 all species →	Cellular Component	cytosolic [4Fe-4S] assembly targeting complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26404	CIAO3; cytosolic iron-sulfur assembly component 3	-	Signaling proteins	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.