Gene detail

Detailed information of Ppa0G047190 in Paragorgia papillata

Genomic Location: Contig00029:3478179...3493584
NR annotation: CAB3987732.1, formin-2-like isoform X1 [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G047190

ATGCCTGCCCCCGCAAAACTCAAAGCTGTTTTAGAAGGAGCTGTCGCCGTTTCGAATCTCGGTTCTAAAGTATGGTGTGGGCAAACGTACAAGGATGTCTTTACTGGAGAAACCCTTATCAGTGTGCTACAGAAAGAACCAACGAACTACCCATCTCGGAAAACAGCTATTGAGTATGCGCAAGAATTGCTGGACACTCATATTATCACCTGCATCACAAAACGCCGTACCTTTGACGACGGTGATAGACTGTATTGCGTTAACCATAAAACACTGGAAAACGCCGAGACTTTTCCGACTACGAACGTCGCACGGAAGAACCCGAGTGCTAAAATAACGAACGCTGAGCGAAAAGAAACAGTTTCCAAACAAAACAGCCAAGAGAAAATAAACGTCCGTAGCCATCAAGATGACAAGCGCTCTTTTGGCAAGGCAGCATCTTTGAGTGGTGAACAAGAAGGCTTAAGAGCTTCCTCGAATCTTCAGCGATTGTTGAAAAAAGACGCAGCGCAGACAAACTCTCGACGAAGTTTGTCGCCTGGCACCAAGGTGGCGTCGTCCAACGTCAAGAAAGGACCGGACGTGGTATTAAAAGATAAACAACCCGAATCCCATAAAGATAAGACTTTAATAAGCAATAGGATTATTACAGTTCCGTGTAAGGACAATCCTAAAGGAAAGTCACAAATACAAGAAACAGATTCGGCTTCCAACTCGGGAAAATCAATATCTGCCCTTCCTGTAACGACTCCCGGCAAGGCTAAACCAGTTGGTCATTCAACGGTGTCTGACAAGACTGGGCACGATAAAAAGGATAGTTTACCCGGAGCAGAAACACCAATTAATGCGAAGCATTTTGACTCCTACGATGCTGCTGTGAACTGTAAACAAAAAGTAGAGAAAACACTTTCCCCCGCGTTGACTGCCCTCATTGAGAAAGACGCTAAAAGTAGCCAGACTTATAGAAAAAAAGAGCAGGTACAAGGAAAGCAACTCCAACGTAATAACGAGGAAGCTTCCGCGGAGGAGAAGGGTAGTAGTGCGAAGACAGAAGAACTCTCGAACAGCTGGGACGCTTTTCAATTGAAGCTTCAGAGTAAAGTTAAAAAGAGCACTCAAGGCCAGTCGCCTGGCAGTGAAGTGCGCGGAGGAGGCGAGGGGACGTCAGCGAATGATCACGCAGCAGAGAGTGGGAGGATCTTATCTGGAGGAGTTACCACTAGAGACGAAGTGGAGAAGAGTAAATTAGAAAAACAGTTATCGTTTGAGAAACATGAACCTACGTCTAAGGGAAAATTGAATTTGCATAAATTATCTACGAAGAATGATGATGTCGTAATGCCTTCAATAACGACAAGAAAGAATTCGTTTCTAAACGTGGAGCAGTGTAAGAAGGACACGAAAGTGGATAATAGCGAAAGAAATTCAACTGCAGTATCTAAGGAGACATTGAATATGCAGAGTAAATTGATTGTTAATGATGATGAGATGTTAATTCCTTCCGTGCGAGCAAGAAAGAGTTCATTTCTTGGCCTTGAGCAAACTGGGAAGACCAAGGAAGATAATTTAAGTCCTGGAAAAATAGATGAAACTAGCAGAGAAAGAACTCCTTCATTCAGTTTAAACGATTCTGAGACTATAATTATCGAGAAGGATGCTCGTTCTGATAGAGCGAAAGATTTTAAAACAAAAGAAAGAGTTCCTTCGTTCAGCTTAAATGACGATTCCAAGATTGTTATTGAGGACACGGGTGCTGTGAAGATTCCATTTGCTAATAAAGAACTTTCGTTTGGGAAGGAACCATCAGGTACTAAAGAAAGAGCTCCTTCGTTTAGTAAAAGAGGCGAATCTACAACTGTACTGATAAAAAAAGGAAATACTAAAAAGGCATTAAGTCAGGAGTTGTCTGTTGATAAAGACGAGTCGGTTACTGGACATAGTGACACCAAGATTGTGGTTGTCGATACCAGCTTGCAAGACCTGAACCAAAGCAAGGAAGAAATAAAGCATCCCGTTCAGAGAAAAGGCAGTAAGTCTACAGCCGAATTTTCACCTAGCAGCAAAACCTCGGATTTATCAACTCCAGACGACCTCGTACGAGTTGGCGGACATGGTATTCGTAAAACACTGGCCGCGCTCTTGGCAAGGGATGGTTCTTCTTCTCCAGAAAAGAAAGAACAGACTTCGGAAAACGATGAGACGAATGTCTTCAGGAGCAAGTTGAAAGGACTCAAGAAAACAGGTCAACGGCCTACGAGTGTCCCGGTTATAGTTACCACTCCCAAGACTAAAGGACAGAGCTCGGCCAAAAGCGACTCGTTATTAGAACACGTGGACGGGAAGGACGTTTTAGACGAGACGGCCTCATCAAAAGACCAAAAAGAGACAACATCCCGGGTCAAAGATACCCCGGTGAAAGTTCCCCCCAATCAGCTCGCATTTATATGTAATAGTGTAGAGGAAAACTTAACATCGACTGTTAAAGCTGTTGAAAGTAGTAAAGTCTCTACGGTAGAACAAACCAGCCATGACAAGGTCAAACAGGAAACATCCGGGAGTCTTCCTGTAGTTAACTTACCAATTCAAGGCAATACGTCCTCAACGAATTACTTGAAATCGCCAGAAAGTCCATCGAAGTACGCTGTTCCTCGTTTAAATCTCAGTCCGTCTAATTCGTATAATTCCCAGAATGGTTCCACTGTTTCTCGTAATACAAGTCTCCGGACTCGTCCCAGTTCGTTGAGCATCTCGCCTTTGGCGAGTGACGATGCCTCACCGTTACAACTGCGCAAAGAACTTGACAGGAACAGAGAGGATTTCGAAGAAAGCAAACAAAAATACGAAAACAAAATCACGGAACTTCAACTGCAGATCGACTTTCTTCGTAGGCAAAAGAGCGGACAGATTGACAGCAACGAAAACGACGGTTTAGAAAGCTCTGCCTCGATATCAGACTTGACGTCATTGTACTCGTCATTTTCGACACCCGTGGTTTCCCCTGGCAACTCGAACGTGACGTCACCATCGCTAACACCAAACGCTACTCCCAGAGGATCTGTGATGGACGAATACATCTCTTTGTCTCCCAGGTCCCCACCGCCGCCACCCCCTCCTGCTCCGCCGTCTGTACCTGCTCTGCCGATTGTAAACGGAAGTCACGTAAAGCCGACAAAAGCCATTGTGAACCCCAGAGCGGACATGAAACCATTATTTTGGAATAGAATCGTAGCTTCAAATGATTCTGACAAGAAAGGAAAATGTGTGTGGAAAACCATAAAAGAGCCAGTCATTGATACCACAGAATTTGAAAGGCTCTTCAGCAAGAAATCTACTAATCGTAAACTTAAGAGAACCAAGTCTTTGCGCGACGACAAACACTTTGCACGTATAAATGGAAAGAAGGTTGCTAAATTGCTTGAAACCAATAGATCACGAGCGATTGGTATTAAAATGAGCAGTCTCAATTGTCAACTGGAGGACATCAGGAACGCTGTTTACAATATGGACACTAGTGTTGTTGATATGGAGAGTCTTCAGTCTATCTACGATATCTATCCTAAAGAAGAGGAGGTTCAGTTAGTTGAAGAACACTTTAAGAAGCTTCCTTCAGTTCCACTGGACAAACCCGAAGAATTCATGTATCAACTAACCAAGATGAAACATTTCAAAGAACGTTTGGAATGCTGTGTTCGTGGTGGTGGTGGTTATGGTGGTAGTTGTGGTGGTGGTGGTGGTTGTGGCGGTAGTGGTTGTGGTGGTTATGGTTGTGGCGGTAGTGGTTGTGGTGGTTATGGTGGTGGTAGTTGTGGTGGTGATGGTAGTGGTTGTGATGGTTATGGTGGTGGTTGTGGTGGTGATGGTAGTGGTTGTGATGGTGGTGGTGATGATGGTGATTGTCGTGGTGATGGTGGTGATGGTGGTGATAGTGATGATGGTGGTAGTGATGGTGGTGGTTATGGTTATGGTGGTAGTGATGGTGGTGGTGGTAGTGGTGGTGGTGGTGGTAGTGGTTGTGATGGTGGTAGTGGTGATGGTGGTAGTGGTGGTGGTGGTTGTCGTGGTGGTGGTTATGGTGGTAGTGATGGTTATGGTGGTTATGGTGGTGGTGATAGTGGTAGTGGTGGTGGTGGCGGTAGTGGTTGTGATGGTGGTAGTGGTGGTAGTGGTGGTGATGGTGGTGATTATGTTGATGACGATGGCGATGGTAGTGGATGTGCGGAGATTTCTGCCATTCTTGCCCTCGTTCTGGCGTATGGTAACTACATGAATGGAAACACAATACGAGGACAAGCTGATGGATTTCATTTAGATGTTTTGCTTAAGCTGCGAGATGTCAAGACTAAGTGTGTTGGGTTGGATTCTGTGGTGTTGTGTGTTGTGTTGGGTTGGATTGATTCTGATATGAACCTACTACAATATACTGTGAAACAATACTTGAAAAAACACGATCGCAGTACAGATAAGAATAAGAATGAGTCCAGATTACCAAGCTCTGTGTCTCTATCCAACGCCGCTCAGGTTTCATTTGATAAACTAAAAGAAGAACTTCTCAAAGTGTCGCTTTTGCTGAAAGAGACTGAAGTTCAGGTTAAGAAAATCCTTGACGAATGCTTACCTACCCAACGAAATCCGTTTGAGGAACAAATGCGCAAATTTCAAACGACCGCTAAACAAAAAATATTGGAAGAAACCAAAAACATGGAAAAAGCTGAGGTTGCTTTTCGGGAAACGGTGGAATATTTCGAGTATGACTTGGACGGGAAAAAGGAAACGGCACAAGAGTTCTTTAGCTTGTGGGCAAAATTCATTGAAGACGTCAAAAACTGCGTCAAGCTGGAGAAACAACAGCAACAAATAGCTAAGAAGAACTTCAGTAAAGTTGAGCATCTAAATCAAGTATGCAAGTCAGATCAACGCTTTTTTCCTCCATATGCTGCTTAA

Transcript

Ppa0G047190

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q68DA7	Formin-1 OS=Homo sapiens OX=9606 GN=FMN1 PE=1 SV=3
Q05860	Formin-1 OS=Mus musculus OX=10090 GN=Fmn1 PE=1 SV=2
Q9JL04	Formin-2 OS=Mus musculus OX=10090 GN=Fmn2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002395 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00610 all species →	DEP	Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)	Domain	Interproscan
PF02181 all species →	FH2	Formin Homology 2 Domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000591 all species →	Domain	DEP domain	Interproscan
IPR015425 all species →	Domain	Formin, FH2 domain	Interproscan
IPR042201 all species →	Homologous_superfamily	Formin, FH2 domain superfamily	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45920 all species →	FORMIN HOMOLOGY 2 DOMAIN CONTAINING, ISOFORM I	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0030866 all species →	Biological Process	cortical actin cytoskeleton organization	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G047190.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.