Gene detail

Detailed information of Ppa0G047510 in Paragorgia papillata

Genomic Location: Contig00029:3757864...3765237
NR annotation: CAB3998177.1, Hypothetical predicted protein [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O08654	Phagosome assembly factor 1 OS=Rattus norvegicus OX=10116 GN=Phaf1 PE=2 SV=1
Q922R1	Phagosome assembly factor 1 OS=Mus musculus OX=10090 GN=Phaf1 PE=1 SV=2
Q9BSU1	Phagosome assembly factor 1 OS=Homo sapiens OX=9606 GN=PHAF1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009592 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03676 all species →	PHAF1	Phagosome assembly factor 1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005373 all species →	Family	Phagosome assembly factor 1	Interproscan
IPR039156 all species →	Family	PHAF1/Protein broad-minded	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13465 all species →	UPF0183 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005802 all species →	Cellular Component	trans-Golgi network	Interproscan
GO:0043001 all species →	Biological Process	Golgi to plasma membrane protein transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K27411	PHAF1; phagosome assembly factor 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.