Detailed information of Ppa0G048550 in Paragorgia papillata

Genomic Location: Contig00029:4669108...4674589
NR annotation: CAB3987452.1, DNA replication factor Cdt1-like [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9I9A7DNA replication factor Cdt1 OS=Xenopus laevis OX=8355 GN=cdt1 PE=1 SV=2
Q8R4E9DNA replication factor Cdt1 OS=Mus musculus OX=10090 GN=Cdt1 PE=1 SV=1
Q9H211DNA replication factor Cdt1 OS=Homo sapiens OX=9606 GN=CDT1 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008039 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08839
all species →		CDT1DNA replication factor CDT1 likeDomainInterproscan
PF16679
all species →		CDT1_CDNA replication factor Cdt1 C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR014939
all species →		DomainCDT1 Geminin-binding domain-likeInterproscan
IPR038090
all species →		Homologous_superfamilyDNA replication factor Cdt1, C-terminal WH domain superfamilyInterproscan
IPR036390
all species →		Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR032054
all species →		DomainDNA replication factor Cdt1, C-terminalInterproscan
IPR045173
all species →		FamilyDNA replication factor Cdt1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR28637
all species →		DNA REPLICATION FACTOR CDT1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000076
all species →		Biological ProcessDNA replication checkpoint signalingInterproscan
GO:0000278
all species →		Biological Processmitotic cell cycleInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0030174
all species →		Biological Processregulation of DNA-templated DNA replication initiationInterproscan
GO:0070182
all species →		Molecular FunctionDNA polymerase bindingInterproscan
GO:0071163
all species →		Biological ProcessDNA replication preinitiation complex assemblyInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10727CDT1; chromatin licensing and DNA replication factor 1-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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