Gene detail

Detailed information of Ppa0G058920 in Paragorgia papillata

Genomic Location: Contig00060:1553338...1558289
NR annotation: XP_028414611.1, zinc finger BED domain-containing protein 4-like [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

Ppa0G058920

ATGGAACAAGCGATGCTCATGTATTTGCCCATGAGAGTTTTAAACTATCCAACTACTTCTTCATTATTAGAACTTTGGTGTCGGGTATTGATAGTGAACTTCGAAATTGTTTATCGGCTCTTAGAAGACGTAAAGAATGGGAAATTCCTTATTATATATTCGTCACCAGAATGTGCACTGGAACAGAGATCTCTGTCATGTCTCAAAGAAGGCGACTTCCACAATAACATGGCTGTAGTTGTCATTGACGATGGGAGTCGGGGAGAGAAGAGAAGAGTTTTTCGAGAGGCATTTGGAGATTTGCCAGTTGGCAAACGTCCACTTATTACTAAAAGTGTAGTATGGGATTATTTTAAAAAGTTATCAAAGGAAGATGACAAAGCACAATGCACTATCTGCTCGGAGTCTTTGAAACATTCACTGAACACCACTAATCTATTTAAGAAGCTGAGAAAAAACGAAAAGAAAATGAGGAGAAAAAATGCACAAACCAAGAAGCAGAAAAGTGCCCCCAATGCAAAACAAAACACAATAGAGAAATCGTTTATACAACAAACCAAATACTCCTCAACTTCTTCAAAACGAAAAACAATCGATGAAGCTGTTTTCAAAATGATTGTTAAGGATATGCAACCTGTATCTGTGGTAGAAGATGAGGGATTCCAATCTTTGTTACATGTACTTGACCCAAGGTACCAACTGCCTTCCAGAAAGTCCACCATGCGAATGTTGCCTGGTGCATATAACAAACAAGTAGAAGAAATCAAGAAGGAAATTTCTCAAGTTTCACATGTAGCTCTCACAAGTGACTTGTGGACATCCAGAACAACAGAGAGCTATATAACCATCACATGTCATTTCCTTACTGCTACATGGGAGCTTAAGTCATTGGTCCTAGAGACTTTAAAGTTTGACTTGAGCCACACTGCTGAGCATATTGCAGATGCCCTCTTGAAAGTTGCTGAGAATTGGGATATATCAAGCAAAGTTGTTGCCATTGTTACAGATAATGCTTCAAACATTGTTGCGGCTGTAAGAATTACTGGTTGGATACATGTTCCTTGCTTTGCGCACACATTAAACCTTGTTGTTTCTGAGGCAATTAAGTCAGATGAAAGTGTTAGTGATTTGAAGAAAAGATGTAAGCAAATTGTCACTTTTTTCCACCAGAGTGTAAAGGCCACTGAGAAGTTAAAGGAAGTGCAATGTCAGCTTAAACTTCCTGAACATAAACTTATCCAGGAGGTAGACACAAGATGGAATTCGACTTTTTACATGTTTGAACGCATTGTTGAGCAACACCAAGCCATTACAACAGCTCTTTGCCTGTCCAGTCGCAATGATTTGTGCCTTTCAGCTGCAGATGTTAAGTTACTAGAAGAATCACTGTCAGTTTTACGGCCATTTGAAGCTGCTACACGGGAGATCTCGGCTGACCAATATGTGTCCATTTCCAAGGCGATACCATTGGCAAGATCACTTCAACACTTGACTGCTGGAAGTTCTCGTGAAACTTCACTTGGATCGGAATTGAGTGCCCAACTGCGTCGAAGATATACTGCAATAGAGCGTGCCCATCTCCTTGCTCTTTCTACCTTGATGGACCCAAGAATGAAGAAGATGGCTTTCTCGAATCGAGAGGCTACACGGCAAGGAGAACACCATGATGAGCAAAATCCACCTGGTTTGTGGGCTCTTTTCGATCAAAAGGTTGTGGATTCACAGTTTACAAGAAGTTCCGCCAGCAAAGCAACAGTTGAAGTCCAGACATACTTTGGTGAAGACGTTTTGCCAAGATTAGAAGATCCTTTGACCTGGTGGAAGATACATGAAAAGCGTTTTAATCTGCTCTCTCAACTTGCCAAGAAGTATTTGTGTGTTCCAGGTACATCTGTCCCATCTGAAAGACTATTTTCTAAGGCAGGTGAACTTGTCTCTATTCGGCGAAACAGACTGAAGGCAAAAAATGTTGACATGATGCTCTTCTTAAACAAAAACATGTAG

Transcript

Ppa0G058920

Protein

Uniprot

Uniprot term	Description
Q80WQ9	Zinc finger BED domain-containing protein 4 OS=Mus musculus OX=10090 GN=Zbed4 PE=2 SV=1
O75132	Zinc finger BED domain-containing protein 4 OS=Homo sapiens OX=9606 GN=ZBED4 PE=1 SV=2
B8MV65	Putative transcriptional regulator tpeD OS=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) OX=441959 GN=TSTA_008170 PE=4 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02892	zf-BED	BED zinc finger	Domain	Interproscan
PF05699	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052035	Family	Zinc finger BED domain-containing	Interproscan
IPR003656	Domain	Zinc finger, BED-type	Interproscan
IPR008906	Domain	HAT, C-terminal dimerisation domain	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46481	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24637	ZBED1; zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1)	EC:2.3.2.-	Ubiquitin system	ko04121	deepkoala